Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03861 ATGGAAGGTCTTTCAGCTCCACCTGGTTTTGTATCTCTAACATCTTTTTTCTTGAAAAAGGATGACAAGGTTGAGAAAACCAGTAAGTCCGACCCGATCCCCACGAAGACTAAACCTGAGATGGATGACAATACTTCATATAACCCGATTTATGCACATCGGCCATGGATAGTATCGGAGAAGGACAGGTGCAAATCTGAGGAATTTTGCGCTGAGCATCGACCTATGGTTAAGAATCCCCATACAAATTCTTCTCGTCCAAAAGGAACTGTATATGGATGTCCAAACTGCAGTAATTGTTTAAAGGTAACAGCAAGGTGGCATCCTGAGGATGCAAGAAGAGAAGTTCTGGAAGATGCTCCTATTTTCCGTCCAACAGAAGAGGAATTCAAAGACACACTTGGATACATCGCAAGCATACGTTCCCGAGCAGAACCATATGGAATATGCCGTATTGTCCCTCCTAGGAGTTGGAAACTGTCATGTACTCTTCAAAAAGAGAATGTATGGGAAAGCTCTGAATTTGTTGCTCAAACTCAGCGAATTGATGGGCACCAAGTTCGGCTTGCACAAGAAAGTATGGCTAGCTCTCATGATACTACCGAAAGCAAGAGAAGAAAAGTGATTAAAGGAGAGATGGACTCTCATCTTGGTAATAGAAGCATTTGCACCTCAAATAACGGAAATGTTGAAGGCTGTGACGGTAAGCCTGAATCCGGTCCCAAGTTCACTCTCAAAATGTTCAAGAAATTGGCAGATGATTTCAAGATCCAATACTTCAACTGCAAGGATGAGATTAAGATTACGGGTTCTGATAAAAATGACGCCATACATCAACAGCAAAGGGAGCCATCTGTTGGGAATATTGAGGGTGAGTACGGACGGATTGTTCAAAATCCAACTGAAGAAATTGAGGTTCTCTGTGGTAATACTTTGGAGGCTGGAGATTTTAGCAGTGGATTTCCAATTCCAACTGTTTCTGACCCTGAATATATGAAATCTGGATGGAACTTAAATAATATGATTTCACTCCCAGGCTCTCTTCTTTCTTTTGAAAACCCTGAAGCTGCACGTAAATTTTCTCCTAGGGTACATGTGGGAATGTGCTTTTCTCCACTTAAATGGAAAGTTGAAGAGCACCAATTGTACTCGTTATGTTACATGCATATGGGTGAACCCAAAGTATGGTATAGTGTCCCAGGAAGATCTGCTGATCACTTTGAAACAGTTTGGAAGAAGTATCTCGGAGATATGAATGCAGGAAAATCTGATTTGCATGATGATCTGACTATGCAGTTATCCTGCTCAGTATTGAAGGCAGAGGGTATACCGGTATATCGTTGTATTCAGTATCCTCGTGAATTTGTTCTTGTCTTCCCTGGAGCATATCATTCAGGATTTGATTGTGGTTTCAACTGTTCTGAAGTGGCAAACTTTGCTCCTCTCGAGTGGCTGCCTCATGGACAGAATGTTGTAGAGCAATATTGTGAACAGAAGAGAAAGACATCAATTTCATTCGATAAGTTGTTACTGGGAGCAGCAAGGGAAACTGTGAGGGTCCGCTGGGAAATTGATATACTTATGAAGAGCACGACCGAGAACTTAACGTGTAGAGATGCATATCAAAGAAATGGGATCTTAAAAGAATCTTTGAATTCTCGCATCAGTAGTGAGAATTTGAAGAGGAAATTTATTTCTACTTCTTTCAAATCACAAAAAATGGATGAAAGCTTTGACGCCAGTTGTAAAAGGGAATGTAGCATATGTCTGCGTGATTTATTCCTGTCAGCTGTTGGTTGTTCGTGTTCAGATGACAAGTTTGTGTGTCTTGATCATGCAAGAAAGCTTTGTTCTTGTCCTTGGACAGACAAAATTCTCCTCTACCGTTACGCAATCAGTGAATTGGAGGTTCTTCATCAAGCTTTGCATGGAAAACTAAGTGCAGTCTATAAATGGGCCAAAGAAGATCTTGGTTTAACTGTGCGCTCAGTTGCCTCCAAGAGATCAAAACAAACCCCAGAGAAAGTAAATGGTTCAGTAGATTCGTCGAAACTACCTATATCACAGTCCACGGTGGATCCATACAACAAGTGGAAACAGCTTAAATCGCAAGGAACACCAAATGCTTTGGCAGGCAAACAGAGCGAAACGGCCTTCCAAGCCAAGCAGTCCCATGGTAGCGCTCACAGTAATTCGAATGTCATTCATCCAAAAATAAACACAACCGTAATTCATTCCGCAGCATCAAATGAGATCAAAGCTAAAGAGAAAACGGCGTTGCACAATTCTGCGGCAAAAAGAATTGGCGAAGGAAGTAATTCATCTGAGATCAAACCTGATAGCAATGCAATTGGTGATAAGCTCACAATTTCGAAGAAAGTAGAAGAACCAAAAGCTTCTGAAGTTTCATCGACTCCAGGCTCGGGTTTCTTGTCTTTTCTAAAAGATGACATTTTCGATGAAGTTTTATCTGATAGTACAAGTTCTTCTAGTTCTTCGGAAACTGACTAG 2511 0.4118 MEGLSAPPGFVSLTSFFLKKDDKVEKTSKSDPIPTKTKPEMDDNTSYNPIYAHRPWIVSEKDRCKSEEFCAEHRPMVKNPHTNSSRPKGTVYGCPNCSNCLKVTARWHPEDARREVLEDAPIFRPTEEEFKDTLGYIASIRSRAEPYGICRIVPPRSWKLSCTLQKENVWESSEFVAQTQRIDGHQVRLAQESMASSHDTTESKRRKVIKGEMDSHLGNRSICTSNNGNVEGCDGKPESGPKFTLKMFKKLADDFKIQYFNCKDEIKITGSDKNDAIHQQQREPSVGNIEGEYGRIVQNPTEEIEVLCGNTLEAGDFSSGFPIPTVSDPEYMKSGWNLNNMISLPGSLLSFENPEAARKFSPRVHVGMCFSPLKWKVEEHQLYSLCYMHMGEPKVWYSVPGRSADHFETVWKKYLGDMNAGKSDLHDDLTMQLSCSVLKAEGIPVYRCIQYPREFVLVFPGAYHSGFDCGFNCSEVANFAPLEWLPHGQNVVEQYCEQKRKTSISFDKLLLGAARETVRVRWEIDILMKSTTENLTCRDAYQRNGILKESLNSRISSENLKRKFISTSFKSQKMDESFDASCKRECSICLRDLFLSAVGCSCSDDKFVCLDHARKLCSCPWTDKILLYRYAISELEVLHQALHGKLSAVYKWAKEDLGLTVRSVASKRSKQTPEKVNGSVDSSKLPISQSTVDPYNKWKQLKSQGTPNALAGKQSETAFQAKQSHGSAHSNSNVIHPKINTTVIHSAASNEIKAKEKTALHNSAAKRIGEGSNSSEIKPDSNAIGDKLTISKKVEEPKASEVSSTPGSGFLSFLKDDIFDEVLSDSTSSSSSSETD 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03861 836 MobiDBLite consensus disorder prediction 23 38 - -
Vivi6g03861 836 ProSiteProfiles JmjN domain profile. 120 161 IPR003349 -
Vivi6g03861 836 Pfam C5HC2 zinc finger 586 636 IPR004198 -
Vivi6g03861 836 PANTHER LYSINE-SPECIFIC DEMETHYLASE 115 751 - -
Vivi6g03861 836 Pfam jmjN domain 121 154 IPR003349 -
Vivi6g03861 836 MobiDBLite consensus disorder prediction 716 736 - -
Vivi6g03861 836 SUPERFAMILY Clavaminate synthase-like 240 523 - -
Vivi6g03861 836 MobiDBLite consensus disorder prediction 23 45 - -
Vivi6g03861 836 SMART JmjN_1 119 160 IPR003349 -
Vivi6g03861 836 Gene3D Cupin 114 502 - -
Vivi6g03861 836 Pfam JmjC domain, hydroxylase 364 479 IPR003347 -
Vivi6g03861 836 ProSiteProfiles JmjC domain profile. 333 496 IPR003347 -
Vivi6g03861 836 SMART cupin_9 330 496 IPR003347 -
Vivi6g03861 836 MobiDBLite consensus disorder prediction 760 811 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03861 Vivi-Chr6 134326054 134330749 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03861 5 666 JUMONJI Transcription Factor Family AT1G08620 46.793 0.0 567
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vivi6g03861 JmjC 5.3e-32 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03861 K11446 - gmx:100804864 997.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g03861 6 134326054 134330749 Vivi6g03861 6 134326054 134330749 ECH