Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03857 ATGCATTTAGGTCAAATGGATCTAGCTTCAGCAAAATGTGTAATCAACAGCATTTCTCGATTCATTCATTTAGTTTCGTGCCAAACAGTGAAGCCTATCCCTCTTCAGAAGAACTGTACTAATATGGTTTCCGTTTTGCGGTGTTTGAAACCGGTGCTTGATGATGTTTTTGATTACAAAGTCCCTTTGGATGAGAATTTGTATAGAGAATGTGAAGAATTGGATAAACAAGTTAATGAAGCTAGGGAGTTTATTGAAAATTGGAGTCCGAAGACAAGCAGGGTTCATAGTGTTCTTCAAAGTGGAGAACTGTTAATAATGTTACAGGACACTGCACTTAGGATTTGTCACATAATTGATAGATTCCATAAGTTAACTTCATCTACCTCAGTTTTGAATAATCTTCAGCACCATATGCAGGAACTGAAGTGTCTTAAGAAGGAATCAACATCGGTCTATATAGAAGAAGTGCTGAGAAATCAAAAGGATAATACTAAGCCTAGCTATGAACGTCAAAGGGAAATTATAGAGTTACTTAATTTGACGTCAAACCAGGATCTACTGAAAGAAAGTATTGCTGTGGAAAAGGAAAGGTTGAATGCGGAAGTTAACAAAACAAAAGGGGAGTTGGATAAAATTAACCAAATTGTGAATCTTGTTTGCAGTTTACGTGATTATGCAATGAAAACTAAATGCCCTGAAGTCAAAAGTGATGTTTCAGTCCCAACGTACTTCCGATGCCCTTTATCGCTTGAACTCATGTTGGATCCTGTTATTGTTGCTTCAGGTCAAACATATCAGAGACAGTCCATCCAAACTTGGCTTGATAACGGGCTGAATGTTTGTCCCAAGACTCATCAGACACTTAACCATGCAATTCTAATTCCCAATTATACGGTTAAAGCTATGATAGCAAGTTGGTGTGAAGAAAATAACATCGAACTTCCCCATCATTCAAAGCAGGGTAATTCTACCCAAAGTTCACCCCCCAAAGATTATTTATTGCATCAAGATTTAAATCGACTCTGTAGTTTTGGGTCTTCGCATAGCAGCAATTCCAATTCAAAATCATCTCTTCAAACCGGAAATGCATTTGAAAAGCAAAAGGGTGATGAGTTCTCCAGATTAAGCGGTGAAGGTGAGACAGAAATGTTTGAGCAACAATCTCAGGCTCATTCATGTAGTCATAGCAGAAGTGAGTCATTTTCAAGTTCTATTTCTAGTACTGATTATGTACCGTCAGTTTCAAAAAAGGTGTCACAGATATCAAATAAGCAATCAAATGTGATGTCGTCTGGAGAAATTAATAATAATGTGTTTCTTGCTTATCCTGCAAATGAAGATGTTGCGAATTTTCCAACGGTATCACAAGAGCAATTTCAAAGCCCTGGATCAAAAGCAACAACGTCAGGGATATCAAATAAACATCAAAATGTGCAGGAGAAGCATCAAAATGTGCAGGAGAAGCATCAAAACGTTCCAACGGTGTCAGGGGTATCGACTAAGCATCAAAGTGTGCTGTTGTCAGGAGAAACAAAGAATAGTGTGTTTCCTGCTTCTCCTGCATATAAAGAATTTGGGAATTTTCCAACGGCATCACAAGAGCAATTTCAAAGCCCTGTATCAAAAAACGCAAAGACGCCAGAGATATCCAATAAACATCAAAATGTGCTGGAGAAGCATCAACATGTTCCAACGGTGTCAGGGGTATCAAACAAGCAACAAAATGTACAGGAGAAGCATCAAAATGTTCCAATGGTGTCAGGGGTATCAAATAAGCAAGAAAATGTACAGGAGAAGCATCAAAATGTTCCATTGGTGTCAGGGTTGTCAAATAAACAACAAAATGTACAGGAGAAGCAGGAAAATGCACAGGAGAAGCATCCAAATGTTCCAGTGGTGTCAAGGATATCAAATAAGCATCAAATTGTGCAGGAGAAGCATCAAAATATTCCAACAGGGACATCAAATAAGCAACAAAATGTGCTTCTGTCTGGAGAAATTAGTAATAGTGTGTTTCCTGCTTCTCCTGTAAATAAGGAAGTTGAAAATTTTCCAACGGTATCGCGAGAGCAATTTCAAAGCCCTGGATCAAGAAATGCAATGACGCCGGAGATATCAAATAAACATCAAAATGTGCAGGAGAAGCATCAAAATATTCCAACGGTGGTAGGGATATCACATAAGCCTCAAAATGTGTCGGGGATATCAAATCAGCATCCAAATGTGCAGGAGAAGCATCAAAATGTTCCAACGGTGTCAGGGATATCAAATACGAATCAAAAAGTGCTTCTGTCTGGAGGAATTAATAATAATGTGTTTCCCGCTTCTCCTGCATATAAAGAATTTGGGAATTTTCCAACGGCATCACGAGAGCAATTTCAGAGCCCTGGATCAAAAAATCATACGACAGAGAATGAAAATAATTACAACAACAATATTGTTTTTACTAGCCATTCAAGTTCAGAAGATGATGCCCATTCTGTTTCCAGCACAGAATCTGATAAATTGACCACCGCACATGTCGGTAAGTTGATTGAAGATCTACAAAGTCAATCAAAAGAAACACAAGCTACTGCTGCCGAAGAATTGCGGCTTCTTACGAAGCATAACATGGAAAACCGTATCATTGTTGGGAAATGTGGTGCCATTATGCATTTACTTCCACTGCTATATTCAGACATGAAGATAACACAAGAGCATGCTGTGACAGCTATACTGAATTTATCGATCAATGAAGACAACAAGACCTTGATTATGGAAGCAGGAGTCATAGAACCACTTATCCATGTTTTGAAGAATGGAAATAATGGTGCCAAGGAAAATTCGGCTGCAACTCTATTCAGCCTCTCAGTACCAGAAAACAATAAGATGAAGATTGGTCGCTCTGGTGCTGTTAAAGCTTTGGTGGAGCTTCTAGCTTCTGGAACTATTAGGGGAAAGAAAGATGCTGCAACTGCTTTATTTAACCTATCAATATTTCACGAGAATAAAGCTCGGATAGTTCAAGCTGGAGCTGTGAAATTTCTGGTTAAGCTATTGGACCCTGCTGATGGAATGGTTGACAAGGCTGTTGCTCTTTTGGCAAACTTATCAACAATCCCAGAGGGTAGAATAGAAATTGTACGTGAAAGGGGAATCCCCTTACTGGTTGAACTTGTGGAATCGGGTTCTCAAAGGGGAAAGGAAAATGCTGCATCGATTGTCTTGCAACTTAGCCTTCATAGCCCTAAGTTTTGCACCCTCATTCTTCAAGAAGGAGCTGTACCTCCCATAGTTGCATTGTCCCAGTTTGGCACGCCAAGAGCAAAGGAAAAGGCACAACAACTTCTCAGTCATTTTCGTAGTCAGCGTGAAGGAGCTAACGGGAGGGGAAAATCATGA 3384 0.393 MHLGQMDLASAKCVINSISRFIHLVSCQTVKPIPLQKNCTNMVSVLRCLKPVLDDVFDYKVPLDENLYRECEELDKQVNEAREFIENWSPKTSRVHSVLQSGELLIMLQDTALRICHIIDRFHKLTSSTSVLNNLQHHMQELKCLKKESTSVYIEEVLRNQKDNTKPSYERQREIIELLNLTSNQDLLKESIAVEKERLNAEVNKTKGELDKINQIVNLVCSLRDYAMKTKCPEVKSDVSVPTYFRCPLSLELMLDPVIVASGQTYQRQSIQTWLDNGLNVCPKTHQTLNHAILIPNYTVKAMIASWCEENNIELPHHSKQGNSTQSSPPKDYLLHQDLNRLCSFGSSHSSNSNSKSSLQTGNAFEKQKGDEFSRLSGEGETEMFEQQSQAHSCSHSRSESFSSSISSTDYVPSVSKKVSQISNKQSNVMSSGEINNNVFLAYPANEDVANFPTVSQEQFQSPGSKATTSGISNKHQNVQEKHQNVQEKHQNVPTVSGVSTKHQSVLLSGETKNSVFPASPAYKEFGNFPTASQEQFQSPVSKNAKTPEISNKHQNVLEKHQHVPTVSGVSNKQQNVQEKHQNVPMVSGVSNKQENVQEKHQNVPLVSGLSNKQQNVQEKQENAQEKHPNVPVVSRISNKHQIVQEKHQNIPTGTSNKQQNVLLSGEISNSVFPASPVNKEVENFPTVSREQFQSPGSRNAMTPEISNKHQNVQEKHQNIPTVVGISHKPQNVSGISNQHPNVQEKHQNVPTVSGISNTNQKVLLSGGINNNVFPASPAYKEFGNFPTASREQFQSPGSKNHTTENENNYNNNIVFTSHSSSEDDAHSVSSTESDKLTTAHVGKLIEDLQSQSKETQATAAEELRLLTKHNMENRIIVGKCGAIMHLLPLLYSDMKITQEHAVTAILNLSINEDNKTLIMEAGVIEPLIHVLKNGNNGAKENSAATLFSLSVPENNKMKIGRSGAVKALVELLASGTIRGKKDAATALFNLSIFHENKARIVQAGAVKFLVKLLDPADGMVDKAVALLANLSTIPEGRIEIVRERGIPLLVELVESGSQRGKENAASIVLQLSLHSPKFCTLILQEGAVPPIVALSQFGTPRAKEKAQQLLSHFRSQREGANGRGKS 1127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03857 1127 Coils Coil 189 216 - -
Vivi6g03857 1127 MobiDBLite consensus disorder prediction 789 835 - -
Vivi6g03857 1127 SUPERFAMILY ARM repeat 842 1114 IPR016024 -
Vivi6g03857 1127 ProSiteProfiles U-box domain profile. 240 314 IPR003613 GO:0004842|GO:0016567
Vivi6g03857 1127 Gene3D - 822 1122 IPR011989 -
Vivi6g03857 1127 MobiDBLite consensus disorder prediction 789 825 - -
Vivi6g03857 1127 MobiDBLite consensus disorder prediction 608 630 - -
Vivi6g03857 1127 MobiDBLite consensus disorder prediction 381 410 - -
Vivi6g03857 1127 MobiDBLite consensus disorder prediction 346 410 - -
Vivi6g03857 1127 Pfam Armadillo/beta-catenin-like repeat 912 951 IPR000225 GO:0005515
Vivi6g03857 1127 Pfam Armadillo/beta-catenin-like repeat 955 992 IPR000225 GO:0005515
Vivi6g03857 1127 Pfam U-box domain 241 312 IPR003613 GO:0004842|GO:0016567
Vivi6g03857 1127 PANTHER U BOX DOMAIN-CONTAINING 36 1115 - -
Vivi6g03857 1127 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 882 924 IPR000225 GO:0005515
Vivi6g03857 1127 SMART arm_5 994 1033 IPR000225 GO:0005515
Vivi6g03857 1127 SMART arm_5 1034 1074 IPR000225 GO:0005515
Vivi6g03857 1127 SMART arm_5 871 911 IPR000225 GO:0005515
Vivi6g03857 1127 SMART arm_5 953 993 IPR000225 GO:0005515
Vivi6g03857 1127 SMART arm_5 912 952 IPR000225 GO:0005515
Vivi6g03857 1127 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 964 1006 IPR000225 GO:0005515
Vivi6g03857 1127 SMART Ubox_2 244 307 IPR003613 GO:0004842|GO:0016567
Vivi6g03857 1127 CDD RING-Ubox_PUB 242 294 IPR045210 -
Vivi6g03857 1127 SUPERFAMILY RING/U-box 239 317 - -
Vivi6g03857 1127 MobiDBLite consensus disorder prediction 346 367 - -
Vivi6g03857 1127 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 315 IPR013083 -
Vivi6g03857 1127 FunFam RING-type E3 ubiquitin transferase 826 1120 - -
Vivi6g03857 1127 Coils Coil 607 627 - -
Vivi6g03857 1127 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1005 1046 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03857 Vivi-Chr6 134237549 134244541 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03857 201 329 U-box Gene Family AT2G23140 46.512 2.10e-31 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03857 - - psat:127126040 1834.69