Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03856 ATGGATCTAGCTTCAGCAAAATGTGTAATCAACAGCATTTCTCGATTCATTCATTTAGTTTCGTGCCAAACAGTGAAGCCTATCCCTCTTCAGAAGAACTGTACTAATATGGTTTCCGTTTTGCGGTGTTTGAAACCGGTGCTTGATGATGTTTTTGATTACAAAGTCCCTTTGGATGAGAATTTGTATAGAGAATGTGAAGAATTGGATAAACAAGTTAATGAAGCTAGGGAGTTTATTGAAAATTGGAGTCCGAAGACAAGCAGGGTTCATAGTGTTCTTCAAAGTGGAGAACTGTTAATAATGTTACAGGACACTGCACTTAGGATTTGTCACATAATTGATAGATTCCATAAGTTAACTTCATCTACCTCAGTTTTGAATAATCTTCAGCACCATATGCAGGAACTGAAGTGTCTTAAGAAGGAATCAACATCGGTCTATATAGAAGAAGTGCTGAGAAATCAAAAGGATAATACTAAGCCTAGCTATGAACGTCAAAGGGAAATTATAGAGTTACTTAATTTGACGTCAAACCAGGATCTACTGAAAGAAAGTATTGCTGTGGAAAAGGAAAGGTTGAATGCGGAAGTTAACAAAACAAAAGGGGAGTTGGATAAAATTAACCAAATTGTGAATCTTGTTTGCAGTTTACGTGATTATGCAATGAAAACTAAATGCCCTGAAGTCAAAAGTGATGTTTCAGTCCCAACGTACTTCCGATGCCCTTTATCGCTTGAACTCATGTTGGATCCTGTTATTGTTGCTTCAGGTCAAACATATCAGAGACAGTCCATCCAAACTTGGCTTGATAACGGGCTGAATGTTTGTCCCAAGACTCATCAGACACTTAACCATGCAATTCTAATTCCCAATTATACGGTTAAAGCTATGATAGCAAGTTGGTGTGAAGAAAATAACATCGAACTTCCCCATCATTCAAAGCAGGGTAATTCTACCCAAAGTTCACCCCCCAAAGATTATTTATTGCATCAAGATTTAAATCGACTCTGTAGTTTTGGGTCTTCGCATAGCAGCAATTCCAATTCAAAATCATCTCTTCAAACCGGAAATGCATTTGAAAAGCAAAAGGGTGATGAGTTCTCCAGATTAAGCGGTGAAGGTGAGACAGAAATGTTTGAGCAACAATCTCAGGCTCATTCATGTAGTCATAGCAGAAGTGAGTCATTTTCAAGTTCTATTTCTAGTACTGATTATGTACCGTCAGTTTCAAAAAAGGTGTCACAGATATCAAATAAGCAATCAAATGTGATGTCGTCTGGAGAAATTAATAATAATGTGTTTCTTGCTTATCCTGCAAATGAAGATGTTGCGAATTTTCCAACGGTATCACAAGAGCAATTTCAAAGCCCTGGATCAAAAGCAACAACGTCAGGGATATCAAATAAACATCAAAATGTGCAGGAGAAGCATCAAAATGTGCAGGAGAAGCATCAAAACGTTCCAACGGTGTCAGGGGTATCGACTAAGCATCAAAGTGTGCTGTTGTCAGGAGAAACAAAGAATAGTGTGTTTCCTGCTTCTCCTGCATATAAAGAATTTGGGAATTTTCCAACGGCATCACAAGAGCAATTTCAAAGCCCTGTATCAAAAAACGCAAAGACGCCAGAGATATCCAATAAACATCAAAATGTGCTGGAGAAGCATCAACATGTTCCAACGGTGTCAGGGGTATCAAACAAGCAACAAAATGTACAGGAGAAGCATCAAAATGTTCCAATGGTGTCAGGGGTATCAAATAAGCAAGAAAATGTACAGGAGAAGCATCAAAATGTTCCATTGGTGTCAGGGTTGTCAAATAAACAACAAAATGTACAGGAGAAGCAGGAAAATGCACAGGAGAAGCATCCAAATGTTCCAGTGGTGTCAAGGATATCAAATAAGCATCAAATTGTGCAGGAGAAGCATCAAAATATTCCAACAGGGACATCAAATAAGCAACAAAATGTGCTTCTGTCTGGAGAAATTAGTAATAGTGTGTTTCCTGCTTCTCCTGTAAATAAGGAAGTTGAAAATTTTCCAACGGTATCGCGAGAGCAATTTCAAAGCCCTGGATCAAGAAATGCAATGACGCCGGAGATATCAAATAAACATCAAAATGTGCAGGAGAAGCATCAAAATATTCCAACGGTGGTAGGGATATCACATAAGCCTCAAAATGTGTCGGGGATATCAAATCAGCATCCAAATGTGCAGGAGAAGCATCAAAATGTTCCAACGGTGTCAGGGATATCAAATACGAATCAAAAAGTGCTTCTGTCTGGAGGAATTAATAATAATGTGTTTCCCGCTTCTCCTGCATATAAAGAATTTGGGAATTTTCCAACGGCATCACGAGAGCAATTTCAGAGCCCTGGATCAAAAAATCATACGACAGAGAATGAAAATAATTACAACAACAATATTGTTTTTACTAGCCATTCAAGTTCAGAAGATGATGCCCATTCTGTTTCCAGCACAGAATCTGATAAATTGACCACCGCACATGTCGGTAAGTTGATTGAAGATCTACAAAGTCAATCAAAAGAAACACAAGCTACTGCTGCCGAAGAATTGCGGCTTCTTACGAAGCATAACATGGAAAACCGTATCATTGTTGGGAAATGTGGTGCCATTATGCATTTACTTCCACTGCTATATTCAGACATGAAGATAACACAAGAGCATGCTGTGACAGCTATACTGAATTTATCGATCAATGAAGACAACAAGACCTTGATTATGGAAGCAGGAGTCATAGAACCACTTATCCATGTTTTGAAGAATGGAAATAATGGTGCCAAGGAAAATTCGGCTGCAACTCTATTCAGCCTCTCAGTACCAGAAAACAATAAGATGAAGATTGGTCGCTCTGGTGCTGTTAAAGCTTTGGTGGAGCTTCTAGCTTCTGGAACTATTAGGGGAAAGAAAGATGCTGCAACTGCTTTATTTAACCTATCAATATTTCACGAGAATAAAGCTCGGATAGTTCAAGCTGGAGCTGTGAAATTTCTGGTTAAGCTATTGGACCCTGCTGATGGAATGGTTGACAAGGCTGTTGCTCTTTTGGCAAACTTATCAACAATCCCAGAGGGTAGAATAGAAATTGTACGTGAAAGGGGAATCCCCTTACTGGTTGAACTTGTGGAATCGGGTTCTCAAAGGGGAAAGGAAAATGCTGCATCGATTGTCTTGCAACTTAGCCTTCATAGCCCTAAGTTTTGCACCCTCATTCTTCAAGAAGGAGCTGTACCTCCCATAGTTGCATTGTCCCAGTTTGGCACGCCAAGAGCAAAGGAAAAGGCACAACAACTTCTCAGTCATTTTCGTAGTCAGCGTGAAGGAGCTAACGGGAGGGGAAAATCATGA 3369 0.3933 MDLASAKCVINSISRFIHLVSCQTVKPIPLQKNCTNMVSVLRCLKPVLDDVFDYKVPLDENLYRECEELDKQVNEAREFIENWSPKTSRVHSVLQSGELLIMLQDTALRICHIIDRFHKLTSSTSVLNNLQHHMQELKCLKKESTSVYIEEVLRNQKDNTKPSYERQREIIELLNLTSNQDLLKESIAVEKERLNAEVNKTKGELDKINQIVNLVCSLRDYAMKTKCPEVKSDVSVPTYFRCPLSLELMLDPVIVASGQTYQRQSIQTWLDNGLNVCPKTHQTLNHAILIPNYTVKAMIASWCEENNIELPHHSKQGNSTQSSPPKDYLLHQDLNRLCSFGSSHSSNSNSKSSLQTGNAFEKQKGDEFSRLSGEGETEMFEQQSQAHSCSHSRSESFSSSISSTDYVPSVSKKVSQISNKQSNVMSSGEINNNVFLAYPANEDVANFPTVSQEQFQSPGSKATTSGISNKHQNVQEKHQNVQEKHQNVPTVSGVSTKHQSVLLSGETKNSVFPASPAYKEFGNFPTASQEQFQSPVSKNAKTPEISNKHQNVLEKHQHVPTVSGVSNKQQNVQEKHQNVPMVSGVSNKQENVQEKHQNVPLVSGLSNKQQNVQEKQENAQEKHPNVPVVSRISNKHQIVQEKHQNIPTGTSNKQQNVLLSGEISNSVFPASPVNKEVENFPTVSREQFQSPGSRNAMTPEISNKHQNVQEKHQNIPTVVGISHKPQNVSGISNQHPNVQEKHQNVPTVSGISNTNQKVLLSGGINNNVFPASPAYKEFGNFPTASREQFQSPGSKNHTTENENNYNNNIVFTSHSSSEDDAHSVSSTESDKLTTAHVGKLIEDLQSQSKETQATAAEELRLLTKHNMENRIIVGKCGAIMHLLPLLYSDMKITQEHAVTAILNLSINEDNKTLIMEAGVIEPLIHVLKNGNNGAKENSAATLFSLSVPENNKMKIGRSGAVKALVELLASGTIRGKKDAATALFNLSIFHENKARIVQAGAVKFLVKLLDPADGMVDKAVALLANLSTIPEGRIEIVRERGIPLLVELVESGSQRGKENAASIVLQLSLHSPKFCTLILQEGAVPPIVALSQFGTPRAKEKAQQLLSHFRSQREGANGRGKS 1122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03856 1122 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 877 919 IPR000225 GO:0005515
Vivi6g03856 1122 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 959 1001 IPR000225 GO:0005515
Vivi6g03856 1122 MobiDBLite consensus disorder prediction 376 405 - -
Vivi6g03856 1122 Gene3D - 802 972 IPR011989 -
Vivi6g03856 1122 MobiDBLite consensus disorder prediction 341 405 - -
Vivi6g03856 1122 SUPERFAMILY ARM repeat 837 1109 IPR016024 -
Vivi6g03856 1122 PANTHER U BOX DOMAIN-CONTAINING 31 1110 - -
Vivi6g03856 1122 FunFam RING-type E3 ubiquitin transferase 821 1115 - -
Vivi6g03856 1122 Pfam U-box domain 236 307 IPR003613 GO:0004842|GO:0016567
Vivi6g03856 1122 CDD RING-Ubox_PUB 237 289 IPR045210 -
Vivi6g03856 1122 MobiDBLite consensus disorder prediction 603 625 - -
Vivi6g03856 1122 SMART arm_5 866 906 IPR000225 GO:0005515
Vivi6g03856 1122 SMART arm_5 989 1028 IPR000225 GO:0005515
Vivi6g03856 1122 SMART arm_5 948 988 IPR000225 GO:0005515
Vivi6g03856 1122 SMART arm_5 907 947 IPR000225 GO:0005515
Vivi6g03856 1122 SMART arm_5 1029 1069 IPR000225 GO:0005515
Vivi6g03856 1122 Gene3D - 976 1116 IPR011989 -
Vivi6g03856 1122 ProSiteProfiles U-box domain profile. 235 309 IPR003613 GO:0004842|GO:0016567
Vivi6g03856 1122 Coils Coil 602 622 - -
Vivi6g03856 1122 MobiDBLite consensus disorder prediction 341 362 - -
Vivi6g03856 1122 Coils Coil 184 211 - -
Vivi6g03856 1122 SMART Ubox_2 239 302 IPR003613 GO:0004842|GO:0016567
Vivi6g03856 1122 SUPERFAMILY RING/U-box 234 312 - -
Vivi6g03856 1122 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 235 310 IPR013083 -
Vivi6g03856 1122 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1000 1041 IPR000225 GO:0005515
Vivi6g03856 1122 MobiDBLite consensus disorder prediction 784 830 - -
Vivi6g03856 1122 MobiDBLite consensus disorder prediction 784 820 - -
Vivi6g03856 1122 Pfam Armadillo/beta-catenin-like repeat 907 946 IPR000225 GO:0005515
Vivi6g03856 1122 Pfam Armadillo/beta-catenin-like repeat 950 987 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03856 Vivi-Chr6 134237548 134244541 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03856 196 324 U-box Gene Family AT2G23140 46.512 2.14e-31 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03856 - - psat:127126040 1826.6