Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03844 ATGCACCTATTAGGGGAGAAGAGGGAGATACTTCAAAGCACTGTTGATCTTGTTCAAAATAACTTGAACTTAGAGGTGATCTATGGGGATACTGATTCAATAATGATTTACAGTGGGCTAGATGATATTGCAAAAGCAACTTCAATAGCTAAGAAAGTTATTCAAGAGGCTCTGGTCAATGTCTGTGGTGCCGTAGTCTGCAAGGAAGAATGCGGTCCATTTGTATCTGTGACTCTTGTGAGGCAGGGTGCTAAACATAATGAAGTGAGAAAGACAATTAGCTTGACCTCTGAGAGTAGTGAACTTCTGTTTTCTGATGTTATTCCTGGAAAATACAGGCTTGAGGTGAAACATAGTTCCCCTGAATCAGTGGCCAAGGAAGATAATTGGTGCTGGGAGAAGAGCTTCATAGATGTAAATATTGGAGCTGAGGACTTGGAAGGAATTGTTTTTGTTCAAAAAGGTTACTGGGTCAATGTGATCTCCACTGATGGATCAACTGTGAATTTAAAGATTCAGATCCACCCTCATGCTTCAAAACAAGTCTTGGATGAACTTTCTGAAAACCTTCAAATTCCTATTGTGGTTCAACCACCACAAATGCAGAGCTGCAGATTGGAGACGAAGAAGATTGTGATGAAGATATGGAAGAAGCTTATGATCATGAAGATGTGA 675 0.4015 MHLLGEKREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDDIAKATSIAKKVIQEALVNVCGAVVCKEECGPFVSVTLVRQGAKHNEVRKTISLTSESSELLFSDVIPGKYRLEVKHSSPESVAKEDNWCWEKSFIDVNIGAEDLEGIVFVQKGYWVNVISTDGSTVNLKIQIHPHASKQVLDELSENLQIPIVVQPPQMQSCRLETKKIVMKIWKKLMIMKM 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03844 224 SUPERFAMILY DNA/RNA polymerases 8 57 IPR043502 -
Vivi6g03844 224 Gene3D Palm domain of DNA polymerase 2 68 IPR023211 -
Vivi6g03844 224 Pfam DNA polymerase family B 12 55 IPR006134 GO:0000166|GO:0003677
Vivi6g03844 224 PANTHER CARBOXYPEPTIDASE REGULATORY REGION-CONTAINING 45 170 - -
Vivi6g03844 224 ProSitePatterns DNA polymerase family B signature. 28 36 IPR017964 GO:0000166|GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03844 Vivi-Chr6 134142213 134145637 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03844 8 56 Core DNA Replication Machinery Family AT5G67100 77.551 4.00e-17 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03844 K26500 - vvo:131601310 379.407