Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03833 ATGGACTTTGATTCTCTTCTCTTTCAAAACCAAAACCAAAACCAAAACCTTCTATACTTCCCTCAAAATTCCTACTCCAATAATTTCTCTTGGGAATTAGAAAATTTCAATAGTTTCTTTAGTGATGATATCGACTTCAACAACGAATCACAAACACATACGAATGAATCATTTTCTTCATCTTTATCATCCGCTGAGTCCAATTCTTTGGTGTCCGTACTAAACAATGAGTCAATAGAAGTCTCATCCAATACAACTTATACACAACTAATCAAACAAACACAAACTTCATCACTATCACCATCACCACCGCAGATTAAGGAAAGTAATAAAAGGGCGTATAGAGGAGTAAGAACAAGGCCATGGGGAAAATTCGCGGCCGAGATAAGAGATTCAACACGAAAAGGTGTTAGAGTATGGATTGGAACATTCGACACGGCCGAGGCGGCCGCGTTAGCTTATGATCAAGCAGCTTTTTCAACAAGAGGTTCATTGGCAGTGTTGAATTTTCCTGAAGAAGTTGTTAGAGAATCACTTAAAGAAATGAGTAGAAACTCTAAGCCTTTGGAAGAAGGTACTTCACCCGTATTGGCACTCAAGAGGAAACACATCATAAGAAAAAAGTCCAATAAGGTTAGTAAAAAGAAAAGCAAAAGTGAAGAACAAATCAAGATTCAAATTGAAACCAAAAATGGTAATAGTAATTCACAAAATGTGTTTGTGTTTGAGGATTTGGGTGCTGAATATCTGGAGCAACTATTGAGCTTGACTTCTTAG 777 0.3694 MDFDSLLFQNQNQNQNLLYFPQNSYSNNFSWELENFNSFFSDDIDFNNESQTHTNESFSSSLSSAESNSLVSVLNNESIEVSSNTTYTQLIKQTQTSSLSPSPPQIKESNKRAYRGVRTRPWGKFAAEIRDSTRKGVRVWIGTFDTAEAAALAYDQAAFSTRGSLAVLNFPEEVVRESLKEMSRNSKPLEEGTSPVLALKRKHIIRKKSNKVSKKKSKSEEQIKIQIETKNGNSNSQNVFVFEDLGAEYLEQLLSLTS 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03833 258 Pfam AP2 domain 114 163 IPR001471 GO:0003700|GO:0006355
Vivi6g03833 258 PANTHER DNA-BINDING DOMAIN 63 254 IPR044808 GO:0003700|GO:0009873
Vivi6g03833 258 CDD AP2 114 172 IPR001471 GO:0003700|GO:0006355
Vivi6g03833 258 MobiDBLite consensus disorder prediction 93 113 - -
Vivi6g03833 258 FunFam Ethylene-responsive transcription factor 2 112 172 - -
Vivi6g03833 258 PRINTS Ethylene responsive element binding protein signature 114 125 IPR001471 GO:0003700|GO:0006355
Vivi6g03833 258 PRINTS Ethylene responsive element binding protein signature 137 153 IPR001471 GO:0003700|GO:0006355
Vivi6g03833 258 MobiDBLite consensus disorder prediction 93 107 - -
Vivi6g03833 258 SUPERFAMILY DNA-binding domain 113 172 IPR016177 GO:0003677
Vivi6g03833 258 ProSiteProfiles AP2/ERF domain profile. 113 171 IPR001471 GO:0003700|GO:0006355
Vivi6g03833 258 Gene3D AP2/ERF domain 113 173 IPR036955 GO:0003700|GO:0006355
Vivi6g03833 258 SMART rav1_2 113 177 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03833 Vivi-Chr6 133955228 133956278 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03833 111 254 AP2-EREBP Transcription Factor Family AT2G31230 55.901 1.24e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi6g03833 AP2 1.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03833 K14516 - gmx:100779524 234.572
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g03833 6 133955228 133956278 Vivi6g03833 6 133955228 133956278 ECH
Vivi1g06597 1 152284688 152286667 Vivi6g03833 6 133955228 133956278 PCT