Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vivi6g03833 | ATGGACTTTGATTCTCTTCTCTTTCAAAACCAAAACCAAAACCAAAACCTTCTATACTTCCCTCAAAATTCCTACTCCAATAATTTCTCTTGGGAATTAGAAAATTTCAATAGTTTCTTTAGTGATGATATCGACTTCAACAACGAATCACAAACACATACGAATGAATCATTTTCTTCATCTTTATCATCCGCTGAGTCCAATTCTTTGGTGTCCGTACTAAACAATGAGTCAATAGAAGTCTCATCCAATACAACTTATACACAACTAATCAAACAAACACAAACTTCATCACTATCACCATCACCACCGCAGATTAAGGAAAGTAATAAAAGGGCGTATAGAGGAGTAAGAACAAGGCCATGGGGAAAATTCGCGGCCGAGATAAGAGATTCAACACGAAAAGGTGTTAGAGTATGGATTGGAACATTCGACACGGCCGAGGCGGCCGCGTTAGCTTATGATCAAGCAGCTTTTTCAACAAGAGGTTCATTGGCAGTGTTGAATTTTCCTGAAGAAGTTGTTAGAGAATCACTTAAAGAAATGAGTAGAAACTCTAAGCCTTTGGAAGAAGGTACTTCACCCGTATTGGCACTCAAGAGGAAACACATCATAAGAAAAAAGTCCAATAAGGTTAGTAAAAAGAAAAGCAAAAGTGAAGAACAAATCAAGATTCAAATTGAAACCAAAAATGGTAATAGTAATTCACAAAATGTGTTTGTGTTTGAGGATTTGGGTGCTGAATATCTGGAGCAACTATTGAGCTTGACTTCTTAG | 777 | 0.3694 | MDFDSLLFQNQNQNQNLLYFPQNSYSNNFSWELENFNSFFSDDIDFNNESQTHTNESFSSSLSSAESNSLVSVLNNESIEVSSNTTYTQLIKQTQTSSLSPSPPQIKESNKRAYRGVRTRPWGKFAAEIRDSTRKGVRVWIGTFDTAEAAALAYDQAAFSTRGSLAVLNFPEEVVRESLKEMSRNSKPLEEGTSPVLALKRKHIIRKKSNKVSKKKSKSEEQIKIQIETKNGNSNSQNVFVFEDLGAEYLEQLLSLTS | 258 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vivi6g03833 | 258 | Pfam | AP2 domain | 114 | 163 | IPR001471 | GO:0003700|GO:0006355 | |
Vivi6g03833 | 258 | PANTHER | DNA-BINDING DOMAIN | 63 | 254 | IPR044808 | GO:0003700|GO:0009873 | |
Vivi6g03833 | 258 | CDD | AP2 | 114 | 172 | IPR001471 | GO:0003700|GO:0006355 | |
Vivi6g03833 | 258 | MobiDBLite | consensus disorder prediction | 93 | 113 | - | - | |
Vivi6g03833 | 258 | FunFam | Ethylene-responsive transcription factor 2 | 112 | 172 | - | - | |
Vivi6g03833 | 258 | PRINTS | Ethylene responsive element binding protein signature | 114 | 125 | IPR001471 | GO:0003700|GO:0006355 | |
Vivi6g03833 | 258 | PRINTS | Ethylene responsive element binding protein signature | 137 | 153 | IPR001471 | GO:0003700|GO:0006355 | |
Vivi6g03833 | 258 | MobiDBLite | consensus disorder prediction | 93 | 107 | - | - | |
Vivi6g03833 | 258 | SUPERFAMILY | DNA-binding domain | 113 | 172 | IPR016177 | GO:0003677 | |
Vivi6g03833 | 258 | ProSiteProfiles | AP2/ERF domain profile. | 113 | 171 | IPR001471 | GO:0003700|GO:0006355 | |
Vivi6g03833 | 258 | Gene3D | AP2/ERF domain | 113 | 173 | IPR036955 | GO:0003700|GO:0006355 | |
Vivi6g03833 | 258 | SMART | rav1_2 | 113 | 177 | IPR001471 | GO:0003700|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vivi6g03833 | Vivi-Chr6 | 133955228 | 133956278 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vivi6g03833 | 111 | 254 | AP2-EREBP Transcription Factor Family | AT2G31230 | 55.901 | 1.24e-50 | 164 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2 or ERF-ERF | Vivi6g03833 | AP2 | 1.6e-12 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vivi6g03833 | K14516 | - | gmx:100779524 | 234.572 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vivi6g03833 | 6 | 133955228 | 133956278 | Vivi6g03833 | 6 | 133955228 | 133956278 | ECH | |
Vivi1g06597 | 1 | 152284688 | 152286667 | Vivi6g03833 | 6 | 133955228 | 133956278 | PCT |