Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03821 ATGGCATTTGTCTCTGGATTTCAGCGCCTACTTCGCCATTCCCACTCCCACTTCACTTCGATTCGTTTCAATTCAACTCTCACTTCCCCCAAACTTTTCGTCAGCGGTCTTTCGAGATTGACAACGGATGAAAAACTTACTGAAGCATTTTCTCCTTTTGGGCAGCTCATGGAAGCTAAGGTGATAATTGACAGAGCCTCTGGAAGATCGAAAGGGTTCGCTTTTGTATCGTATGCAACTGTAGAAGAAGCTGAGAAGGCAAGAGAAGGAATGAATGCTAAATTTTTGGATGGATGGGTTATATTTGTTGATCCTGCCAAACCAAGAGAACCTCGACCTCCTCAGCAATCAGAATCTCAGCCTTCTCAAACAGGTTTCACAGTTAATAAGACCGTTGGATGGTGTGGTTGA 411 0.4404 MAFVSGFQRLLRHSHSHFTSIRFNSTLTSPKLFVSGLSRLTTDEKLTEAFSPFGQLMEAKVIIDRASGRSKGFAFVSYATVEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPPQQSESQPSQTGFTVNKTVGWCG 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03821 136 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 30 108 IPR000504 GO:0003723
Vivi6g03821 136 MobiDBLite consensus disorder prediction 116 130 - -
Vivi6g03821 136 Gene3D - 20 130 IPR012677 -
Vivi6g03821 136 PANTHER NUCLEOLAR PROTEIN 8 20 135 - -
Vivi6g03821 136 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 32 98 IPR000504 GO:0003723
Vivi6g03821 136 SUPERFAMILY RNA-binding domain, RBD 29 129 IPR035979 GO:0003676
Vivi6g03821 136 FunFam RNA binding protein 17 130 - -
Vivi6g03821 136 SMART rrm1_1 31 104 IPR000504 GO:0003723
Vivi6g03821 136 MobiDBLite consensus disorder prediction 106 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03821 Vivi-Chr6 133634731 133636428 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03821 32 123 Eukaryotic Initiation Factors Gene Family AT3G16380 36.842 6.57e-13 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03821 - - gmx:100306326 220.32