LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi6g03820	ATGACGTCATTCTTGAAGCCTGAAAATGCCCTCAAAAGGGCAGAAGAGTTGATCAATGTCGGGCAGAAGCAGGATGCTCTTCAGACTCTGCACGACCTTATTACTTCGAAAAGATACCGAGCATGGCAGAAAACTCTCGAACGGATTATGTTTAAGTATGTAGAGCTATGTGTTGACATGAGGAAAGGACGGTTTGCTAAGGATGGGCTTATTCAGTACCGTATCATATGTCAGCAAGTGAATGTTAGTTCGCTGGAGGAGGTGATTAAGCATTTCATGCACCTGTCAACAGAGAAAGCTGAGCAAGCTCGTAGCCAGGCTCAGGCCTTAGAAGAGGCTCTTGATGTTGATGACTTGGAGGCTGATAAAAGGCCTGAGGACTTGATGCTGAGCTATGTCAGTGGAGAGAAGGGAAAGGATCGATCCGACCGGGAGCTTGTTACCCCTTGGTTTAAATTTCTTTGGGAAACTTACAGGACAGTGCTGGAGATATTGCGGAACAACTCCAAGTTGGAAGCCTTATATGCTATGACAGCTCACCGAGCTTTCCAGTTTTGTAAGCAATACAAAAGAACAACTGAATTCCGGAGACTTTGTGAAATCATTAGAAATCATTTGGCTAATCTTAACAAATATCGGGACCAACGAGACCGACCTGATCTTTCTGCTCCTGAAAGCTTGCAATTATATCTGGATACAAGATTTGAGCAGCTGAAAATTGCCACTGAGCTTGAACTCTGGCAGGAAGCTTTTAGGTCTGTTGAAGATATACATGGGTTAATGTGCATGGTCAAGAAAACTCCAAAACCATCATTGATGACAGTTTACTATGTTAAGTTGACTGAAATATTTTGGATATCTTCAAGTCATTTATATCATGCATACGCGTGGTTCAAACTCTTTTTGCTACAAAAAAGCTTCAACAAAAATCTGAGTCAGAAGGATTTGCAATTGATAGCTTCATCTGTTGTTCTAGCTGCACTCTCAGTGCCTCCTCATGACCGCACTCACGGTGCATCTCATTTAGAATTAGAGCATGAAAAGGAGCGGAATTTGAGGATGGCTAATCTCATAGGCTTTAATCTCGAATCTAAGCCCGATAGTAGAGAAGTGCTCTCAAGGTCATCACTTCTTGCTGAACTGGCATCAAAGGGTGTAATGTCTTGTGTTTCACAAGAAGTGAAAGACATTTACTATCTTTTGGAACATGAATTTCTACCCTCGGATCTCGCACTAAAAGTACTACCCTTGCTAAATAAAATTTCAAAATTAGGGGGTAAGTTTACCTTTGCTTCATCGGTTCCAGAGGTGCATTTTTCGCAGTATGTCCCAGCACTTGAAAAGTTAGCTACCTTGAGGTTGCTACAACAGGTGTCTAATGTGTACCAATCAATGAAGATTGAAAACTTAGCTGGAATGATTCCTTTCTTTGAGTTTTCCGTTGTGGAAAAAATTTCCGTAGATGCTGTTAAGCAGAAGTTTCTGTCGATGAAAGTTGACCACATGAAAAATGTTGTCATTTTCTGCAAGACGAGTCTTGAGGCTGATGGATTGAGGGATCACTTGGCCAATTTTGCCGAGCAGTTGAACAAGGCGAGGCAAATGATCTGTCCTCCTGATGCAAAACGATCTAAACACGGAAGCTTGCTTCCAACCTTGCCAGAGGTTGTAGCCAAAGAACACAAGAGGCTTCTTGCTCGGAAATCAATTATTGAGAAGAGGAAAGAAGAACAAGAACGACAACTTCTTGAACAGGAACGTGAGGAGGAGTCTAAGAGGTTAAGACTGCTTAAAATTACTGAAGAAGCAGAACGAAAGCGGCTTGAAACTGAGGTTGAGCTGAGGAAGAAACAAAGACTTAAAATGGAAATGGAGGAAAAAGATAAAGAGGAAGCTCAGGCTATACTTCAGGAAGCTGAAAAGCGCTTTAAGAGAAAGGGTAAAAAGCCCATCATAGACGGGGGTGTAATTTCTAAGAAAACCTTGATGGAGTTGGCTTTGATTGAACAACACCGGGAGAAGCAGGAAATGGAGAAGAAATTGCAGAAATTAGCTAAAACCATGGATTATTTGGAAAGAGCAAAGAGAGAAGAGGCTGCTCCGCTTATTGAAGCTGCATATCAACAACGCCTAGTGGAAGAGAGGGTTCTTCATGAGCATGAGCAACAACAAGAGGTAGAACTGAGCAGACAGCGCCATGCTGGAGATCTCAATGAGAAAGAGAGGCTTAGTCGAATGATGGGCCATAAAGAGATATATCAAGAGAGAGTTGTCAGTCATCGCCAAGCAGAATTTAACAGATTGAGAAGAGAAAGGGAGGAGCGTATATCTAGGATTTTACAGTCCAGGAGGCAGGAGAGGGATAAAATGAGGAAGTTGAAGTATTATCTAAAAGTTGAAGAAGAGAGACGGCAAAAATTGCGCGAGGAGGAAGAAGCTCGTAAGCACGAAGAGGCTGAGAGAAAAAAGAAGGAACAGGCTGAACACCAAGCAAAATTGGACGAGATCGCTGAAAAGAAGAGGAGAAGGGAACAAGAAATCGAAGAAAAAATTGAGAGGGAAAAGAGGGAAGCATTACTGGGCAGACCAGCTGAACCAGCTATGAGGGCTCATGAGCCTCCTGCCCGTCCATTGGAGTCTCGCCCTGCCGTTGCTGTAGCTTCCACAGCCCCAGCTCCCGGGAAATATGTTCCGAAGTTCCGGCGAGCAGGAGCTGAAGCCACAGCTGCTCCTCCTCCAGAAGCAGATCGATGGGGCAACAGTGGCAGCAGGCCAGATGGTGACAGGTGGGACCGTGGCACTTCATTTGGTGGGGGTTCCCGGTCATCTTCATCATGGTCATCTTCCAGGAATTCGCGTGATCGTCCGTGA	2871	0.4399	MTSFLKPENALKRAEELINVGQKQDALQTLHDLITSKRYRAWQKTLERIMFKYVELCVDMRKGRFAKDGLIQYRIICQQVNVSSLEEVIKHFMHLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKIATELELWQEAFRSVEDIHGLMCMVKKTPKPSLMTVYYVKLTEIFWISSSHLYHAYAWFKLFLLQKSFNKNLSQKDLQLIASSVVLAALSVPPHDRTHGASHLELEHEKERNLRMANLIGFNLESKPDSREVLSRSSLLAELASKGVMSCVSQEVKDIYYLLEHEFLPSDLALKVLPLLNKISKLGGKFTFASSVPEVHFSQYVPALEKLATLRLLQQVSNVYQSMKIENLAGMIPFFEFSVVEKISVDAVKQKFLSMKVDHMKNVVIFCKTSLEADGLRDHLANFAEQLNKARQMICPPDAKRSKHGSLLPTLPEVVAKEHKRLLARKSIIEKRKEEQERQLLEQEREEESKRLRLLKITEEAERKRLETEVELRKKQRLKMEMEEKDKEEAQAILQEAEKRFKRKGKKPIIDGGVISKKTLMELALIEQHREKQEMEKKLQKLAKTMDYLERAKREEAAPLIEAAYQQRLVEERVLHEHEQQQEVELSRQRHAGDLNEKERLSRMMGHKEIYQERVVSHRQAEFNRLRREREERISRILQSRRQERDKMRKLKYYLKVEEERRQKLREEEEARKHEEAERKKKEQAEHQAKLDEIAEKKRRREQEIEEKIEREKREALLGRPAEPAMRAHEPPARPLESRPAVAVASTAPAPGKYVPKFRRAGAEATAAPPPEADRWGNSGSRPDGDRWDRGTSFGGGSRSSSSWSSSRNSRDRP	956

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi6g03820	956	Coils	Coil	515	535	-	-
	Vivi6g03820	956	MobiDBLite	consensus disorder prediction	803	956	-	-
	Vivi6g03820	956	Hamap	Eukaryotic translation initiation factor 3 subunit A [EIF3A].	1	932	IPR027512	GO:0005852
	Vivi6g03820	956	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT	1	946	IPR027512	GO:0005852
	Vivi6g03820	956	ProSiteProfiles	PCI domain profile.	316	513	IPR000717	-
	Vivi6g03820	956	MobiDBLite	consensus disorder prediction	803	862	-	-
	Vivi6g03820	956	FunFam	Eukaryotic translation initiation factor 3 subunit A	352	494	-	-
	Vivi6g03820	956	MobiDBLite	consensus disorder prediction	936	950	-	-
	Vivi6g03820	956	FunFam	Eukaryotic translation initiation factor 3 subunit A	217	268	-	-
	Vivi6g03820	956	FunFam	Eukaryotic translation initiation factor 3 subunit A	268	342	-	-
	Vivi6g03820	956	Gene3D	UVR domain	217	268	-	-
	Vivi6g03820	956	SMART	motif in proteasome subunits, Int-6, Nip-1 and TRIP-15	441	532	IPR000717	-
	Vivi6g03820	956	Coils	Coil	561	649	-	-
	Vivi6g03820	956	Coils	Coil	790	857	-	-
	Vivi6g03820	956	Coils	Coil	93	120	-	-
	Vivi6g03820	956	Coils	Coil	667	697	-	-
	Vivi6g03820	956	Gene3D	-	269	342	-	-
	Vivi6g03820	956	Gene3D	-	354	508	-	-
	Vivi6g03820	956	Pfam	PCI domain	373	508	IPR000717	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi6g03820	Vivi-Chr6	133614256	133621120	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi6g03820	1	956	Eukaryotic Initiation Factors Gene Family	AT4G11420	69.645	0.0	1281

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi6g03820	K03254		-	gmx:100803796	1393.64