Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03780 ATGGATCAACAAGGGTTACTTCGCCCTAAGAAACCCTTCATTGCAGACGATGAGATCATAGAGCTACTATGGCAAAACGGTCAAGTTGTCACGCAGACTCAAAACAACCGCCATATCAACAAACCACCGCCGGTGACAAACTCTGACGACTCCACTCCCGGCGGAAGGGAGAATCAACATCTCTTCATGCAAGAAGGAGAAATGGCTTCGTGGCTTCATTATCCTAATGATGATGATTCTCCTTTCGATCCATCTTTCTGCGCCGATTTTACCATGATAACTCCACAACGGAGGTCCGAGCCGGTGCCTCCGAACTTCGCATACTTTGCGAGGCACGGTGTTAGAGCTGAACCAGAACCGTTGTCTAGAAGGGAATCAACAATAGTAGATTCGTGTGACACGCCGGCTGTGATGCTAACGGCGGTATCGGAGACGCTAAGAAGCTCAGCTGAGCCAACGGAAGTAGAAACCGGCTTGACGGCGCCTTCAACGACGTTTGACGAACCAGATGGTTCGAGTAGCGATGTAGAACCGGTTCGGGAGGTAGCGGAACGGGACCGGAAGCGGAAGGGAAGGGAGGAAGAGGAATGGAAGTATCAAAACGAGGATATTGATTTTGAATATGCGGAAGCCAAAAATAAAACCAGTGGAACATCAACAAAGAGATCTCGTGCTGCTGAGGTCCATAGTCTCTCAGAGAGGAGGCGCCGTGATCGGATTAATGAAAAGATGAAAGCTCTGCAAGAACTTATACCTCGATCTAATAAGTCTGACAAAGCGTCTATGCTGGATGAGGCAATTGAGTACTTGAAGTCACTGCAGTTACAAGTTCAGAGAATACATCATATGCAGATGATGTCCATGGGATGTGGCATGGTACCAATGATGTTTCCTGGAATCCAGCAGTGTATGCCATCAATTGGAATGGGAATAAACAGGCCAGTAATGCCGTTTCCCAATATGTTTTCTGGTTCTGTTTTGCCTGCAAATTTTGGACCAAGGTTCACAATACCTCCTTTCCACACGCCGCATGTTCCTACACCTGATTCATTCACAATGTCAGCAGCAAATCTGGTAGATAAGAACATGCCCACATCAGTTGGAACACATGATTCAAATAAGTCAGGTATCCCAAACGTCACTGATCCTTATCCACAATACCTTGGACCTCACCAGACGCAGTTTCAGTTAATGCAGAATCAGACAATGAACCAACCAAATGCCAGCAAGTTAGAAAGCCGCCAGTCAGGAGATAAATGA 1260 0.4683 MDQQGLLRPKKPFIADDEIIELLWQNGQVVTQTQNNRHINKPPPVTNSDDSTPGGRENQHLFMQEGEMASWLHYPNDDDSPFDPSFCADFTMITPQRRSEPVPPNFAYFARHGVRAEPEPLSRRESTIVDSCDTPAVMLTAVSETLRSSAEPTEVETGLTAPSTTFDEPDGSSSDVEPVREVAERDRKRKGREEEEWKYQNEDIDFEYAEAKNKTSGTSTKRSRAAEVHSLSERRRRDRINEKMKALQELIPRSNKSDKASMLDEAIEYLKSLQLQVQRIHHMQMMSMGCGMVPMMFPGIQQCMPSIGMGINRPVMPFPNMFSGSVLPANFGPRFTIPPFHTPHVPTPDSFTMSAANLVDKNMPTSVGTHDSNKSGIPNVTDPYPQYLGPHQTQFQLMQNQTMNQPNASKLESRQSGDK 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03780 419 MobiDBLite consensus disorder prediction 144 196 - -
Vivi6g03780 419 Gene3D - 219 285 IPR036638 GO:0046983
Vivi6g03780 419 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 222 282 IPR036638 GO:0046983
Vivi6g03780 419 MobiDBLite consensus disorder prediction 173 196 - -
Vivi6g03780 419 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 224 273 IPR011598 GO:0046983
Vivi6g03780 419 CDD bHLH_AtPIF_like 224 293 IPR047265 -
Vivi6g03780 419 MobiDBLite consensus disorder prediction 33 58 - -
Vivi6g03780 419 SMART finulus 230 279 IPR011598 GO:0046983
Vivi6g03780 419 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 20 410 IPR031066 -
Vivi6g03780 419 MobiDBLite consensus disorder prediction 144 171 - -
Vivi6g03780 419 Pfam Helix-loop-helix DNA-binding domain 228 274 IPR011598 GO:0046983
Vivi6g03780 419 MobiDBLite consensus disorder prediction 209 234 - -
Vivi6g03780 419 FunFam Basic helix-loop-helix transcription factor 219 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03780 Vivi-Chr6 132970604 132974773 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03780 16 283 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 42.006 1.00e-52 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi6g03780 HLH 1.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03780 - - tpra:123888958 539.65