Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03779 ATGGATCAACAAGGGTTACTTCGCCCTAAGAAACCCTTCATTGCAGACGATGAGATCATAGAGCTACTATGGCAAAACGGTCAAGTTGTCACGCAGACTCAAAACAACCGCCATATCAACAAACCACCGCCGGTGACAAACTCTGACGACTCCACTCCCGGCGGAAGGGAGAATCAACATCTCTTCATGCAAGAAGGAGAAATGGCTTCGTGGCTTCATTATCCTAATGATGATGATTCTCCTTTCGATCCATCTTTCTGCGCCGATTTTACCATGATAACTCCACAACGGAGGTCCGAGCCGGTGCCTCCGAACTTCGCATACTTTGCGAGGCACGGTGTTAGAGCTGAACCAGAACCGTTGTCTAGAAGGGAATCAACAATAGTAGATTCGTGTGACACGCCGGCTGTGATGCTAACGGCGGTATCGGAGACGCTAAGAAGCTCAGCTGAGCCAACGGAAGTAGAAACCGGCTTGACGGCGCCTTCAACGACGTTTGACGAACCAGATGGTTCGAGTAGCGATGTAGAACCGGTTCGGGAGGTAGCGGAACGGGACCGGAAGCGGAAGGGAAGGGAGGAAGAGGAATGGAAGTATCAAAACGAGGATATTGATTTTGAATATGCGGAAGCCAAAAATAAAACCAGTGGAACATCAACAAAGAGATCTCGTGCTGCTGAGGTCCATAGTCTCTCAGAGAGGAGGCGCCGTGATCGGATTAATGAAAAGATGAAAGCTCTGCAAGAACTTATACCTCGATCTAATAAGTCTGACAAAGCGTCTATGCTGGATGAGGCAATTGAGTACTTGAAGTCACTGCAGTTACAAGTTCAGATGATGTCCATGGGATGTGGCATGGTACCAATGATGTTTCCTGGAATCCAGCAGTGTATGCCATCAATTGGAATGGGAATAAACAGGCCAGTAATGCCGTTTCCCAATATGTTTTCTGGTTCTGTTTTGCCTGCAAATTTTGGACCAAGGTTCACAATACCTCCTTTCCACACGCCGCATGTTCCTACACCTGATTCATTCACAATGTCAGCAGCAAATCTGGTAGATAAGAACATGCCCACATCAGTTGGAACACATGATTCAAATAAGTCAGGTATCCCAAACGTCACTGATCCTTATCCACAATACCTTGGACCTCACCAGACGCAGTTTCAGTTAATGCAGAATCAGACAATGAACCAACCAAATGCCAGCAAGTTAGAAAGCCGCCAGTCAGGTGTAGGAACATGCGGCGTGTGGAAAGGAGGCATTGCGAACCTTGGTCCAAAATTTGCAAGCAATGCAGAACCAGAAAACACATTAGGAAACGACATTACTGACATGTTTATTCCCATTCCAATTGGTGTCCATATACTGTTGTATTTCGGGAAACATCATAGGTACCATGCCACATCCGATGGACATCATCTGCATAACTTGTACGCTATGTTTAAGAAATGA 1455 0.4639 MDQQGLLRPKKPFIADDEIIELLWQNGQVVTQTQNNRHINKPPPVTNSDDSTPGGRENQHLFMQEGEMASWLHYPNDDDSPFDPSFCADFTMITPQRRSEPVPPNFAYFARHGVRAEPEPLSRRESTIVDSCDTPAVMLTAVSETLRSSAEPTEVETGLTAPSTTFDEPDGSSSDVEPVREVAERDRKRKGREEEEWKYQNEDIDFEYAEAKNKTSGTSTKRSRAAEVHSLSERRRRDRINEKMKALQELIPRSNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMFPGIQQCMPSIGMGINRPVMPFPNMFSGSVLPANFGPRFTIPPFHTPHVPTPDSFTMSAANLVDKNMPTSVGTHDSNKSGIPNVTDPYPQYLGPHQTQFQLMQNQTMNQPNASKLESRQSGVGTCGVWKGGIANLGPKFASNAEPENTLGNDITDMFIPIPIGVHILLYFGKHHRYHATSDGHHLHNLYAMFKK 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03779 484 CDD bHLH_AtPIF_like 224 287 IPR047265 -
Vivi6g03779 484 FunFam Basic helix-loop-helix transcription factor 219 282 - -
Vivi6g03779 484 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 224 273 IPR011598 GO:0046983
Vivi6g03779 484 SMART finulus 230 279 IPR011598 GO:0046983
Vivi6g03779 484 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 222 290 IPR036638 GO:0046983
Vivi6g03779 484 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 20 403 IPR031066 -
Vivi6g03779 484 Gene3D - 219 282 IPR036638 GO:0046983
Vivi6g03779 484 MobiDBLite consensus disorder prediction 173 197 - -
Vivi6g03779 484 MobiDBLite consensus disorder prediction 33 58 - -
Vivi6g03779 484 MobiDBLite consensus disorder prediction 144 197 - -
Vivi6g03779 484 Pfam Helix-loop-helix DNA-binding domain 228 274 IPR011598 GO:0046983
Vivi6g03779 484 MobiDBLite consensus disorder prediction 144 171 - -
Vivi6g03779 484 MobiDBLite consensus disorder prediction 209 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03779 Vivi-Chr6 132970595 132975783 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03779 16 279 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 42.222 1.84e-52 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi6g03779 HLH 1.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03779 - - tpra:123888958 545.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g03779 6 132970595 132975783 Vivi6g03779 6 132970595 132975783 ECH
Vivi6g03779 6 132970595 132975783 Vivi1g06735 1 157799422 157804762 PCT