Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03749 ATGGCAACTCAAGGTCAAGTCATTACATGCAAAGCTGCGGTGGCCTGGGAACCCAACAAACCCTTAACAATCGAAGACGTCGAGGTTGCTCCGCCGCAAGCCAACGAAGTCCGAATCCAAATCCTCTTCACCGCTCTCTGCCACACCGATGCATACACCTGGAGCGGCAAGGATCCCGAAGGTCTTTTCCCCTGCATTCTCGGTCACGAAGCTGCAGGGATTGTTGAAAGTGTGGGAGAAGGCGTGACTGATGTTAAGCCTGGTGATCATGTGATTCCGTGTTACCAGGCTGAGTGTGGAGAATGTAAGTTTTGCAAATCGGGCAAGACCAACCTCTGTGGGAAGGTTCGTGCTGCTACTGGTGTTGGGGTTATGATGGCGGATCGGAAGCCGCGGTTTTCTATTAAGGGGAAACCGATTTATCATTTTATGGGAACTTCGACTTTTAGTCAATACACTGTTGTTCATGATGTTAGTGTTGCTAAGATTCATCCTGATGCTCCTTTGGACAAAGTTTGTCTTCTTGGATGTGGTGTTCCAACTGGCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAGCCAGGATCAATTGTTGCTATTTTCGGCCTTGGAACTGTTGGGCTTGCTGTTGCAGAGGGTGCAAAAAGTGCTGGCGCATCGCGGATTATTGGCATAGATCTTGATAATAACAAGTATGAAACAGCTAAAAACTTTGGTGTCACCGAGTTCATTAATCCAAAAGACCATGAGAAACCAATTCAGCAGGTTATAGTTGATCTAACAGATGGAGGAGTTGATTATAGCTTTGAGTGCATTGGAAATGTCTCAGTGATGAGATCTGCTTTGGAATGCTGCCACAAGGGCTGGGGAACATCAGTTATTGTGGGTGTTGCAGCATCGGGGCAGGAAATATCAACTCGCCCTTTCCAGTTGGTGACTGGCCGTGTATGGAAAGGAACAGCTTTTGGTGGCTTTAAGAGTAGGTCACAAGTGCCTTGGCTTGTAGAGAAGTACTTGAAGAAGGAAATCAAGGTTGATGAGTACATTACCCATAATTTGACTCTTGTGGAAATCAACAAGGCTTTTGAGCTTTTGCATGGAGGGCAATGTCTTCGTTGTGTGCTCAGTACTTGA 1134 0.4656 MATQGQVITCKAAVAWEPNKPLTIEDVEVAPPQANEVRIQILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTDVKPGDHVIPCYQAECGECKFCKSGKTNLCGKVRAATGVGVMMADRKPRFSIKGKPIYHFMGTSTFSQYTVVHDVSVAKIHPDAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAIFGLGTVGLAVAEGAKSAGASRIIGIDLDNNKYETAKNFGVTEFINPKDHEKPIQQVIVDLTDGGVDYSFECIGNVSVMRSALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVEKYLKKEIKVDEYITHNLTLVEINKAFELLHGGQCLRCVLST 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03749 377 Gene3D - 182 320 - -
Vivi6g03749 377 PANTHER ALCOHOL DEHYDROGENASE 5 375 - -
Vivi6g03749 377 FunFam S-(hydroxymethyl)glutathione dehydrogenase 13 200 - -
Vivi6g03749 377 Pfam Zinc-binding dehydrogenase 206 328 IPR013149 -
Vivi6g03749 377 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 168 341 IPR036291 -
Vivi6g03749 377 NCBIfam S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 10 375 IPR014183 GO:0006069|GO:0008270|GO:0051903
Vivi6g03749 377 CDD alcohol_DH_class_III 8 375 IPR014183 GO:0006069|GO:0008270|GO:0051903
Vivi6g03749 377 Gene3D - 13 372 - -
Vivi6g03749 377 FunFam S-(hydroxymethyl)glutathione dehydrogenase 182 320 - -
Vivi6g03749 377 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Vivi6g03749 377 Pfam Alcohol dehydrogenase GroES-like domain 35 162 IPR013154 -
Vivi6g03749 377 SUPERFAMILY GroES-like 326 375 IPR011032 -
Vivi6g03749 377 SUPERFAMILY GroES-like 3 197 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03749 Vivi-Chr6 132513809 132516719 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03749 10 331 Monolignol Biosynthesis Gene Families AT1G72680 26.300 3.20e-15 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03749 K00121 - mnt:21398977 723.391
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g03749 6 132513809 132516719 Vivi6g03749 6 132513809 132516719 ECH