Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03742 ATGGCTTCATTCACTTGCTCCGCCTCCGACCTCCACGCTCTCCTCGGAACCAACTCAAACTCCACCGCCGCCGCAGAGTACATCTGCAACAACTTCAATGCTGTTGCAAACAAATTCATAGACACCTCCTACGCCGTCGACAACACCTACCTTCTCTTCTCCGCTTACCTAGTTTTCGCCATGCAACTTGGTTTCGCAATGCTCTGCGCTGGCTCCGTCCGTGCCAAAAACACCATGAATATCATGTTAACAAACGTTCTAGATGCCGCTACCGGTGGTATATTTTTCTATATCTTCGGTTTTGCCCTAGCTTACGGTACACCGTCAAACGGTTTCATCGGTAAACATTTCTTTGGGTTAAGCGATTTTCCTTCTCAGTCTTTTGATTACGGATTCTTTCTGTATCAATGGGCTTTCGCAATCGCCGCAGCGGGGATCACCAGTGGTTCTATAGCTGAGAGAACACAGTTTGTTTCTTATTTGATCTATTCATCTTTTCTAACCGGTTTGGTTTATCCAATTGTTGCTCATTGGTTTTGGTCCAGTGATGGTTGGGGTAGTCCTGTTAGATCTGAGAATCTCTTGTTTGGTTCCGGTGTCATCGATTTCGCTGGCTGTGGCGTTGTTCATTTGGTTGGTGCTGTTGCTGGTTTCTGGGGTGCTTTCATTGAAGGACCAAGAATAGGTAGATTTGATCATGAAGGTAGGGTTGTTTCCATGAGAGGACATAGCGGTACTTTAGTTGTTATGGGAACATTCTTGTTATGGTTTGGTTGGTACGGTTTTAACCCTGGTTCTTTTCTCACCATTTTGAAAACCTATGGAGAAAGTGGTAATTCATATGGTCAGTGGAGTGCTATAGGAAGAACAGCAGTGACAACAACGTTAGCTGGATGCACTGCAGCTTTGACCACGTTGTTTGGTAAACGCATGCAAACCGGTCATTGGAATGTTACTGATGTATGTAACGGTCTTCTCGGTGGTTTTGCTGCTATAACCGCAGGTTGTTCTGTGGTTGATCCATGGGCTGCTGTTATCTGTGGATTTGTTGCTGCATGGGTTTTGATTGGATGCAATTTGTTGGCTGATAGGTTTCATTACGATGATCCTCTTGAAGCTGCTCAGCTTCACGGTGGCTGTGGAACATGGGGGATTATTTTCACTGCTTTGTTTGCTAAGAAACAGTATGTTATGGAAGTTTACGGCGGTGCGGCGGATAGGCCTTATGGTTTGTTTTTGGGAGGGGGTGGAAGGTTGTTGGGGGCACATTGTGTGCAGATTGTGGCTATTGTGGTTTGGGTTAGTGTTACTATGGGGACACTGTTTTTTATTCTTCATAAGATGAAATTGCTTAGGACTTCCGCTGAGGAAGAAATGGCTGGTTTGGATTTAACTAGCCATGGTGGAGTGGCTTATGAGTATCATGATGAGGTTGAATTGCATTCCAAGAAACAACGTGCGTTTGAGATGTGA 1473 0.4508 MASFTCSASDLHALLGTNSNSTAAAEYICNNFNAVANKFIDTSYAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGIFFYIFGFALAYGTPSNGFIGKHFFGLSDFPSQSFDYGFFLYQWAFAIAAAGITSGSIAERTQFVSYLIYSSFLTGLVYPIVAHWFWSSDGWGSPVRSENLLFGSGVIDFAGCGVVHLVGAVAGFWGAFIEGPRIGRFDHEGRVVSMRGHSGTLVVMGTFLLWFGWYGFNPGSFLTILKTYGESGNSYGQWSAIGRTAVTTTLAGCTAALTTLFGKRMQTGHWNVTDVCNGLLGGFAAITAGCSVVDPWAAVICGFVAAWVLIGCNLLADRFHYDDPLEAAQLHGGCGTWGIIFTALFAKKQYVMEVYGGAADRPYGLFLGGGGRLLGAHCVQIVAIVVWVSVTMGTLFFILHKMKLLRTSAEEEMAGLDLTSHGGVAYEYHDEVELHSKKQRAFEM 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03742 490 NCBIfam ammonium transporter 47 472 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vivi6g03742 490 ProSitePatterns Ammonium transporters signature. 202 227 IPR018047 GO:0008519|GO:0016020|GO:0072488
Vivi6g03742 490 FunFam Ammonium transporter 28 487 - -
Vivi6g03742 490 Gene3D Ammonium transporter AmtB like domains 24 488 IPR029020 -
Vivi6g03742 490 PANTHER AMMONIUM TRANSPORTER 21 475 - -
Vivi6g03742 490 Pfam Ammonium Transporter Family 50 472 IPR024041 GO:0008519|GO:0016020|GO:0072488
Vivi6g03742 490 SUPERFAMILY Ammonium transporter 44 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03742 Vivi-Chr6 132477429 132478901 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03742 5 485 Inorganic Solute Cotransporters AT4G13510 73.651 0.0 742
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03742 K03320 - cave:132166278 805.823