Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vivi6g03730 | ATGGGTTTTGATGAAACTTTGGTCACATGGCTTTCTTCTTCAGGATCATGGAGGAAAAATACCCTTTTGACTGAGATCCTTGGATTGCCAGTTTTGGAACTTGTGGCAATATGTACTAATTTGGTTGTTCTTGTTTTGTTTCTTTTGCGGCAGATTTTTTTATGTTTTGGTGGGAGAGTTTGGTTTTATAAGGATAATAATAGTATTAATAATAGTACTGTTGTTGTTGGCAATGGTGGTTTAATTCGTGGTAGTGTTGTTGGAGAAACTTTTGAGGTTAGGATTGGGACATGGTTTAAGTTGTCTGTGTTGTCTTGTTTTTATGTTCTGTTGGTGCAAGTTTTTGTTTTGGGGTTTGATGCTGTTTCTTTGATTAAGGATGAGTTTGTGGTTGTGGATTTGTCTCTTCTTTCGGCGCCGTTTGTTCAGGGCTTGGTTTGGATTGTGTTGAGCTTTAGTGTTTTGCATTGCAAATACAGGGTTTCTCAGAAGTTTCCGATTTTGCTGAGGGTTTCTTGGTTTGTATTGTTTGTTGTTTGTTTGTGTGGTTTATATGTTGATGGGAGAGGGTTTTGGTTGGATAGTTCGAAGTACGTGGTCTCTCATGTTTTGGCGAATTTTGCTGCTACCCCTGCTCTTGCCTTTCTGTGTTTTGTAGCAGTTAGGGGTGTTTCTGGTATACAAGTTTGTAGAAATGCGGAGAATCAACAGCCGTTACTTATTGATGAAGAAGAAGACGAAGAACCGGGTTGCGTTAAGGTTACTCCTTATAATGATGCTGGACTTTACAGTTTGGCTACTCTGTCTTGGCTTGACCCGATTCTTTCCATTGGTGCAAAGAGACCGCTTGAGCTTAAGGACATTCCTCTTGTTGCGCCTAAAGATAAAGCCAAAACAAATTTTAAGATTTTGAAATCTAATTGGGAGAAATTGAAGGCTGAGAACTCAGCGACTCCGCCTTCATTAGCTTGGGCACTTCTCAAATCGTTCTGGAAGGAGGCGGCTGTTAATGCCATTTTTGCTGGTGTCACTACTCTTGTCTCGTATGTAGGTCCATACATGATAAGTTACTTTGTTGATTACTTGAGTGGAATAGAGACTTACCCTCACGAGGGGTATGTCCTTGCAGGGATTTTCTTTGTTGCAAAGCTTGTGGAAACCTTTGCAACGAGACAATGGTATCTAGGAGTGGATATCTTAGGGATGCATGTTAGGTCCGCATTAACTGCGATGGTATATCAGAAGGGGCTTAAATTATCGAGTATTGCCAGGCAAAGTCACACAAGTGGCGAGATTGTTAATTACATGGCTATTGATGTTCAGAGGGTAGGGGACTATGCTTGGTATCTTCATGACATGTGGATGCTTCCTCTGCAGATTGTTCTCGCCCTTGCAATCTTGTATAAGAATGTCGGAATTGCTTCCATTGCAACACTTGTTGCCACAATCATTTCCATTGCAGTCACTATCCCTGTGGCTCGGATCCAAGAAGACTATCAAGACAAATTAATGGCTGCCAAGGATGAAAGAATGAGAAAAACATCCGAGTGCTTAAGGAACATGAGGATTCTCAAGCTGCAGGCATGGGAGGAGAGATATCGAATAAGATTGGAGGAGATGCGTGGTGTAGAGTTCAAGTGGCTTAGGAAAGCCCTATATTCTCAGGCTTTCATAACTTTCATGTTCTGGAGCTCACCTATATTTGTTTCTGCCGTCACTTTTGCTACTTGCATAATGTTGGGCGGTCAGCTAACAGCAGGCGGTGTACTTTCGGCTCTAGCTACTTTTAGGATCCTCCAAGAACCTTTGAGGAATTTTCCAGACTTGGTATCTACAATGGCTCAGACAAAAGTTTCTATTGATCGACTAACTTGTTTTCTGCTGGAGGAAGAATTGCAGGAAGATGCAACTATTGTCTTGCCACGGGGTGTTTCTAACATTGCCATAGAAATCAAGGACAGTGAATTCTCTTGGGACCCTTCTTCATCTTGCAGGCCTACGCTTTCAGAGATAAATATGAAAGTTGAAAAAGGGATGCGCGTGGCTGTTTGTGGTACGGTTGGTTCAGGGAAATCAAGTTTTCTTTCTTGCATCCTTGGGGAGATTCCTAAGATTTCTGGTGAAGTCAGTGTGTGTGGTTCTGCTGCATATGTCTCCCAATCAGCATGGATACAATCAGGAACTATAGAAGAAAATATACTCTTTGGAAGTATAAAAGACAAAGCAAAGTACAAGAATGTTCTTCATGCTTGTTCACTGAAAAAGGATCTAGAACTTTTCTCGCATGGAGATCAGACAATTATTGGTGATAGAGGCATAAACCTGAGCGGGGGTCAGAAGCAGCGGGTGCAGCTTGCCCGGGCACTATACCAAGATGCTGATGTTTATCTCCTTGACGATCCCTTCAGTGCAGTTGATGCACACACTGGATCAGAGTTGTTTAGGGAATATATATTGTCGGCACTGGAAAATAAAACAGTCATTTTTGTGACCCATCAAGTTGAATTTCTTCCTGCTGCTGATCTGATACTGGTTCTCAGGGAAGGTAGCATCATACAGGCTGGAAAGTATGACGATCTCTTAAAAGCAGGAACAGATTTTAAAGCTCTAGTTTCAGCTCACCATGAAGCTATAGAGGCTATGGATATCCCTAATCACTCATCTGAAGATTCAGAGGAACATTTATCATTAGAGGAATCTGTTATGACAAGTAAGAAATCCATTTGTTCTGTGAATGATGTTGACAGTTTGACAAAGGAAATGCAAGAGGGACCATCGTCTTCCGATCAACAAACAACTAAGGAGAAGAAGAAAGCTAAAAGATCGAGAAAAAAACAGCTTGTACAGGAAGAGGAGAGGGTTAGAGGTAGAGTTAGCATGAAGGTGTATCTTTCATACATGGCAGCGGCATATAAAGGTGCATTGATTCCACTCATAATCATTGCACAAGCATTATTTCAGTTCCTTCAGATTGCTAGTAATTGGTGGATGGCGTGGGCTAACCCTCAAACAGAAGGAGACAAGCCCAAAGTAACTCCCATGAATCTTCTTCTTGTTTACATGGCCCTCGCTTTTGGCAGTTCATTGTTTATATTTGTTAGGGCTGTTCTAGTCGCTACGTTTGGTCTCGGAGCTGCACAGAAGCTATTTTTGAAGATGCTTAGATGTGTTTTCCATGCACCAATGTATTTCTTTGATTCTACACCCGCTGGAAGGATCTTGAACCGGGTTTCTGTTGATCAGAGTGTTGTGGATCTTGACATCCCTTTTAGACTCGGTGGGTTTGCTGCTACAACAATACAGCTTATTGGTATTGTTGGTGTAATGACAGAAGTTACATGGCAAGTTTTGCTCTTAGTCATCCCAATGGCCATTGCTTGTTTATGGATGCAGAAATACTACATGGCTTCCTCTAGGGAATTGGTGCGTATTGTAAGCATCCAGAAATCACCAATTATAAATCTTTTTGGTGAATCGATTGCTGGAGCATCCACAATCAGGGGTTTCGGACAAGAAAAAAGGTTCATGAAGCGGAACCTTTATCTTCTTGATTGTTTTGCACGACCTTTCTTCTACAGTCTTGCTGCTATTGAGTGGCTCTGCCTGCGTATGGAACTCCTGTCCACCTGTGTATTTTCTTTCTGCATGCTATTGCTTGTTAGCTTTCCCCATGGAAGTATTGACCCTAGCATGGCTGGACTTGCTGTGACATATGGTCTGAATTTAAATGCGCGGTTATCCCGTTGGATACTTAGCTTTTGCAAACTTGAAAACAAAATTATATCAATTGAAAGAATTTATCAATACAGCCAAATTCCTAGTGAAGCACCGGCAGTTATTGAAGATTCCCGCCCTCCATCCTTATGGCCTGAAAATGGGACAATTGAAATAATTGATTTGAAGGTCCGTTACAAAGAAAATCTTCCTTTGGTACTTCATGGAGTATCATGCACATTTCCTGGTGGGAAGAATATAGGAATAGTTGGACGCACCGGCAGTGGCAAATCTACGTTAATTCAAGCATTGTTTCGACTGATTGAACCAGCAGACGGAAGTATCCACATAGACAACATCAATATTTTAGAGATCGGTCTTCATGACCTCCGAAGTCATCTCAGTATCATACCACAGGATCCAACCTTGTTTGAAGGGACCATTCGAGGAAATCTTGATCCTCTTGAGGAGCACTCAGATAAAGACATTTGGGAGGCACTAGATAAGTCTCAACTTGGACAGATCATCCGTGAGAAAGGACAAAAGCTTGATACACCAGTTATAGAAAATGGAGACAATTGGAGTGTAGGACAGCGGCAACTTGTTTCTCTCGGCCGAGCTCTATTGAAGCAGTCAAAAATACTTGTACTTGATGAAGCAACAGCATCCGTCGACACTGCCACTGATAATCTTATCCAGAAGATTATTCGAACAGAGTTCAAAGCCTGCACCGTGCTCACCATTGCACATCGTATCCCTACTGTCATTGACAGCGATCAAGTTCTGGTGCTCAGTGATGGTAGAGTTGCTGAATTCGACACTCCTTTACGACTATTAGAGGATAAGTCATCCATGTTTCTAAAGTTGGTGTCTGAGTATTCATCACGGTCGAGTGGTATACCAGAATTTTAG | 4626 | 0.4185 | MGFDETLVTWLSSSGSWRKNTLLTEILGLPVLELVAICTNLVVLVLFLLRQIFLCFGGRVWFYKDNNSINNSTVVVGNGGLIRGSVVGETFEVRIGTWFKLSVLSCFYVLLVQVFVLGFDAVSLIKDEFVVVDLSLLSAPFVQGLVWIVLSFSVLHCKYRVSQKFPILLRVSWFVLFVVCLCGLYVDGRGFWLDSSKYVVSHVLANFAATPALAFLCFVAVRGVSGIQVCRNAENQQPLLIDEEEDEEPGCVKVTPYNDAGLYSLATLSWLDPILSIGAKRPLELKDIPLVAPKDKAKTNFKILKSNWEKLKAENSATPPSLAWALLKSFWKEAAVNAIFAGVTTLVSYVGPYMISYFVDYLSGIETYPHEGYVLAGIFFVAKLVETFATRQWYLGVDILGMHVRSALTAMVYQKGLKLSSIARQSHTSGEIVNYMAIDVQRVGDYAWYLHDMWMLPLQIVLALAILYKNVGIASIATLVATIISIAVTIPVARIQEDYQDKLMAAKDERMRKTSECLRNMRILKLQAWEERYRIRLEEMRGVEFKWLRKALYSQAFITFMFWSSPIFVSAVTFATCIMLGGQLTAGGVLSALATFRILQEPLRNFPDLVSTMAQTKVSIDRLTCFLLEEELQEDATIVLPRGVSNIAIEIKDSEFSWDPSSSCRPTLSEINMKVEKGMRVAVCGTVGSGKSSFLSCILGEIPKISGEVSVCGSAAYVSQSAWIQSGTIEENILFGSIKDKAKYKNVLHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADVYLLDDPFSAVDAHTGSELFREYILSALENKTVIFVTHQVEFLPAADLILVLREGSIIQAGKYDDLLKAGTDFKALVSAHHEAIEAMDIPNHSSEDSEEHLSLEESVMTSKKSICSVNDVDSLTKEMQEGPSSSDQQTTKEKKKAKRSRKKQLVQEEERVRGRVSMKVYLSYMAAAYKGALIPLIIIAQALFQFLQIASNWWMAWANPQTEGDKPKVTPMNLLLVYMALAFGSSLFIFVRAVLVATFGLGAAQKLFLKMLRCVFHAPMYFFDSTPAGRILNRVSVDQSVVDLDIPFRLGGFAATTIQLIGIVGVMTEVTWQVLLLVIPMAIACLWMQKYYMASSRELVRIVSIQKSPIINLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFYSLAAIEWLCLRMELLSTCVFSFCMLLLVSFPHGSIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPSEAPAVIEDSRPPSLWPENGTIEIIDLKVRYKENLPLVLHGVSCTFPGGKNIGIVGRTGSGKSTLIQALFRLIEPADGSIHIDNINILEIGLHDLRSHLSIIPQDPTLFEGTIRGNLDPLEEHSDKDIWEALDKSQLGQIIREKGQKLDTPVIENGDNWSVGQRQLVSLGRALLKQSKILVLDEATASVDTATDNLIQKIIRTEFKACTVLTIAHRIPTVIDSDQVLVLSDGRVAEFDTPLRLLEDKSSMFLKLVSEYSSRSSGIPEF | 1541 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vivi6g03730 | 1541 | ProSitePatterns | ABC transporters family signature. | 775 | 789 | IPR017871 | GO:0005524|GO:0016887 | |
Vivi6g03730 | 1541 | Pfam | ABC transporter | 1312 | 1460 | IPR003439 | GO:0005524 | |
Vivi6g03730 | 1541 | Gene3D | - | 1278 | 1530 | IPR027417 | - | |
Vivi6g03730 | 1541 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1295 | 1529 | IPR003439 | GO:0005524 | |
Vivi6g03730 | 1541 | SUPERFAMILY | ABC transporter transmembrane region | 975 | 1275 | IPR036640 | GO:0005524|GO:0016020 | |
Vivi6g03730 | 1541 | CDD | ABCC_MRP_domain1 | 649 | 850 | - | - | |
Vivi6g03730 | 1541 | SUPERFAMILY | ABC transporter transmembrane region | 323 | 629 | IPR036640 | GO:0005524|GO:0016020 | |
Vivi6g03730 | 1541 | Pfam | ABC transporter transmembrane region | 339 | 603 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Vivi6g03730 | 1541 | Pfam | ABC transporter transmembrane region | 978 | 1220 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Vivi6g03730 | 1541 | Gene3D | - | 629 | 894 | IPR027417 | - | |
Vivi6g03730 | 1541 | FunFam | ABC transporter C family member 5 | 939 | 1276 | - | - | |
Vivi6g03730 | 1541 | CDD | ABC_6TM_ABCC_D2 | 976 | 1270 | IPR044726 | GO:0140359 | |
Vivi6g03730 | 1541 | FunFam | ABC transporter C family member 5 | 634 | 882 | - | - | |
Vivi6g03730 | 1541 | SMART | AAA_5 | 1321 | 1506 | IPR003593 | GO:0016887 | |
Vivi6g03730 | 1541 | SMART | AAA_5 | 677 | 858 | IPR003593 | GO:0016887 | |
Vivi6g03730 | 1541 | Gene3D | ABC transporter type 1, transmembrane domain | 937 | 1276 | IPR036640 | GO:0005524|GO:0016020 | |
Vivi6g03730 | 1541 | Gene3D | ABC transporter type 1, transmembrane domain | 302 | 628 | IPR036640 | GO:0005524|GO:0016020 | |
Vivi6g03730 | 1541 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 645 | 872 | IPR027417 | - | |
Vivi6g03730 | 1541 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 338 | 615 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Vivi6g03730 | 1541 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 649 | 873 | IPR003439 | GO:0005524 | |
Vivi6g03730 | 1541 | FunFam | ABC transporter C family member 10 | 318 | 631 | - | - | |
Vivi6g03730 | 1541 | CDD | ABCC_MRP_domain2 | 1293 | 1513 | - | - | |
Vivi6g03730 | 1541 | CDD | ABC_6TM_ABCC_D1 | 336 | 623 | IPR044746 | GO:0140359 | |
Vivi6g03730 | 1541 | Pfam | ABC transporter | 668 | 802 | IPR003439 | GO:0005524 | |
Vivi6g03730 | 1541 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 978 | 1248 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Vivi6g03730 | 1541 | MobiDBLite | consensus disorder prediction | 918 | 950 | - | - | |
Vivi6g03730 | 1541 | FunFam | ABC transporter C family member 3 | 1278 | 1530 | - | - | |
Vivi6g03730 | 1541 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1285 | 1525 | IPR027417 | - | |
Vivi6g03730 | 1541 | PANTHER | ATP-BINDING CASSETTE SUB-FAMILY C | 258 | 1532 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vivi6g03730 | Vivi-Chr6 | 132313797 | 132320655 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vivi6g03730 | 649 | 866 | Calmodulin-binding Proteins | AT2G36910 | 31.197 | 8.02e-22 | 101 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vivi6g03730 | - | - | gmx:100790550 | 2502.63 |