Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03669 ATGGTTGCATTCTGTTCTCCTCAGTACTCATACTCAAACATGGGATGGCTCTTCCAAGAGTTAGGGCCTGCAGAGTCTTTAAATATTATCGATAAGGAGAAGAACTATGTAACTAATTTAGAGTACTCTTCACAATATCATCAATTCTCTTCACTAAAGCAACAACATGTTGAGACTGAAACGCCACCACCATCCCCTAAGCTTATGGTGAAGAAGCTTAACCATAATGCTAGTGAACGTGATCGCCGGAAAAAGGTCAATAGCTTGATTTCTTCGCTTCGTTCACTTCTTCCCGGTGACGATCAAACGAAGAAATTGAGTATTCCGGTAACAATTTCAAGAGTTTTAAAATACATACCGGAATTACAAAAGAAGGTTGAAGGATTAACTAAGAAAAAGGAAGAGCTTCTATCAAGAATTTCTCGACAAGAATACGCGGTCAACAAAGAATCACAAAGGAAAATAATTCCAAGTTATAATTCTTCTTTTGTTGTTTCAACAAGTAGGCTTAATGATTGTGAGCTTGCTGTTCATATCTCATCTTATGAGGCTCATAAGATTCCAATATCAGAGATCTTGATGTGTTTAGAAGATAATGAACTTTTTCTACTAAATTCTTCTTCTTCTAAAACATTTGGAGGGAGGGTTTTCTATAACTTGCATCTTCAGGTGGATAAAACTCAAAGATTAGAGTGTGATGATCTTATTCAGAAGCTTTCATCAGTCTATGAGAGGCAGCGAAGTAATCAAGTAGAGTTGGGAGCTAGAGATCATACGATCAGGAGTGTTATGATATATTAA 801 0.3658 MVAFCSPQYSYSNMGWLFQELGPAESLNIIDKEKNYVTNLEYSSQYHQFSSLKQQHVETETPPPSPKLMVKKLNHNASERDRRKKVNSLISSLRSLLPGDDQTKKLSIPVTISRVLKYIPELQKKVEGLTKKKEELLSRISRQEYAVNKESQRKIIPSYNSSFVVSTSRLNDCELAVHISSYEAHKIPISEILMCLEDNELFLLNSSSSKTFGGRVFYNLHLQVDKTQRLECDDLIQKLSSVYERQRSNQVELGARDHTIRSVMIY 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03669 266 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 70 122 IPR011598 GO:0046983
Vivi6g03669 266 Coils Coil 119 139 - -
Vivi6g03669 266 SMART finulus 76 128 IPR011598 GO:0046983
Vivi6g03669 266 Pfam Helix-loop-helix DNA-binding domain 71 123 IPR011598 GO:0046983
Vivi6g03669 266 Gene3D - 65 154 IPR036638 GO:0046983
Vivi6g03669 266 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 71 143 IPR036638 GO:0046983
Vivi6g03669 266 FunFam Transcription factor ORG2 66 151 - -
Vivi6g03669 266 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 65 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03669 Vivi-Chr6 131192670 131194271 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03669 11 245 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 42.510 2.65e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi6g03669 HLH 6.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03669 - - psat:127129084 443.351