Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03667 ATGGTTGCATTCTGTTCTCCTCAATTCAAATACTCAAACATGGGATGGCTACAAGAGTTAGAGCCTGCACAGTCCTTAAGTATTAACCCTAAGGAGAACAATTATGTTTCCTCTTTACCGCAATATCATCTATTCTCTTCACCGAAGCAACAACATCTTGAGACTGAAACGTCACCACCATCTCCTAAGCTTATGGTGAAGAAGCTTAACCACAATGCTAGCGAACGTGATCGCCGCAAAAAGATCAATGGCTTGATTTCTTCACTTCGTTCACTTCTTCCTGATCAAGATCAAACGAAAAAAATGAGCATTCCGGTAACAATTTCAAGAGTCTTAAAATACATACCGGAATTACAAAAGCAAGTTGAAGGATTAACTAAGAAAAAAGAAGATCTTATATCAAGAATTTCCCAGCAACAATATGCAGTCAACAAAGATTCACATAGGAAAATAATTCCTAATTACAGTTCTTCTTTTGTGGTTTCAACAAGTAGACTTAATGATAATGAGCTTGCTATTCATATCTCATCTTATGAAGCTTACAAGATTCCATTATCTGAGATCTTGTTGTGTTTGGAAAATAATGGACTTGTTCTACTAAGTTCTTCCTGTTCTAAAACATTTGGAGGGAGACTCTTCTACAACTTGCATTTTCAGGTGGGAAATGCTCAAAGTTTAGAGTGTGATGTTCTTATTCAGAAGCTTTTGCCAGCAATGTAA 720 0.3639 MVAFCSPQFKYSNMGWLQELEPAQSLSINPKENNYVSSLPQYHLFSSPKQQHLETETSPPSPKLMVKKLNHNASERDRRKKINGLISSLRSLLPDQDQTKKMSIPVTISRVLKYIPELQKQVEGLTKKKEDLISRISQQQYAVNKDSHRKIIPNYSSSFVVSTSRLNDNELAIHISSYEAYKIPLSEILLCLENNGLVLLSSSCSKTFGGRLFYNLHFQVGNAQSLECDVLIQKLLPAM 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03667 239 Pfam Helix-loop-helix DNA-binding domain 67 119 IPR011598 GO:0046983
Vivi6g03667 239 Coils Coil 115 135 - -
Vivi6g03667 239 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 57 219 - -
Vivi6g03667 239 Gene3D - 61 148 IPR036638 GO:0046983
Vivi6g03667 239 FunFam Transcription factor ORG2 62 147 - -
Vivi6g03667 239 CDD bHLH_AtORG2_like 67 139 - -
Vivi6g03667 239 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 66 118 IPR011598 GO:0046983
Vivi6g03667 239 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 67 142 IPR036638 GO:0046983
Vivi6g03667 239 SMART finulus 72 124 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03667 Vivi-Chr6 131123477 131124818 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03667 64 236 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 48.295 3.11e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi6g03667 HLH 5.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03667 - - vvo:131614671 470.314