Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03662 ATGGGTATGGCTGCAGAATCACAGTTTCATGTCTTGGCTGTTGATGATAGTATCATAGATAGAAAACTCATTGAAAGACTCCTCAAAACCTCTTCTTATCAAGTTACTACAGTTGATTCTGGTAGCAAGGCTTTAGAGTTCTTGGGCCTGTGTGAAAATGAACAGAATCATCATACCAGCACAAATACACCGTCTGTCTTTCCTAATAATCATCAGGAAGTGGAAGTTAATCTTGTTATAACAGATTACTGTATGCCCGGCATGACAGGCTATGATTTGCTTAAGAAAATCAAGGAATCATCATCATTGAGAAACATACCAGTGGTAATTATGTCATCTGAAAATGTGCCTTCTAGAATTAATAGATGTTTAGAGGAAGGAGCAGAAGAATTTTTCTTGAAACCTGTAAGGCTATCAGATTTGAGTAGACTTAAACCTCACATGAAGAAAAACAAAGTGAAAGATCCAAGAAATGAAACAGAAGAAAAGATTGAAAACTCAGAAATTCTACTTCCACAACAAGAAGCACCAAAATCTCAATATTCACATTCAGAATCAGAATCAGAAACACAGTTACAAGCACATTCAACTATTGATCAACAGCAACAACCACTACAACAAAACAACAATAATAACAAGAGAAAAAGTATGGAACAACAAGGACTTTCATCTGAGACTGATAGAACAAGACAAAGATACAGTGGCATAGCTACTGTTGTATGA 723 0.3568 MGMAAESQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLCENEQNHHTSTNTPSVFPNNHQEVEVNLVITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRINRCLEEGAEEFFLKPVRLSDLSRLKPHMKKNKVKDPRNETEEKIENSEILLPQQEAPKSQYSHSESESETQLQAHSTIDQQQQPLQQNNNNNKRKSMEQQGLSSETDRTRQRYSGIATVV 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03662 240 ProSiteProfiles Response regulatory domain profile. 10 149 IPR001789 GO:0000160
Vivi6g03662 240 MobiDBLite consensus disorder prediction 172 240 - -
Vivi6g03662 240 SMART REC_2 9 145 IPR001789 GO:0000160
Vivi6g03662 240 Pfam Response regulator receiver domain 11 141 IPR001789 GO:0000160
Vivi6g03662 240 Gene3D - 10 235 - -
Vivi6g03662 240 MobiDBLite consensus disorder prediction 147 240 - -
Vivi6g03662 240 CDD REC_typeA_ARR 11 144 - -
Vivi6g03662 240 SUPERFAMILY CheY-like 8 144 IPR011006 -
Vivi6g03662 240 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 225 IPR045279 GO:0009736
Vivi6g03662 240 MobiDBLite consensus disorder prediction 147 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03662 Vivi-Chr6 130984969 130986863 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03662 1 240 Response Regulator Gene Family AT3G57040 62.500 1.81e-93 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi6g03662 Response_reg 2.5e-19 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03662 K14492 - gmx:100814494 328.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g03662 6 130984969 130986863 Vivi6g03662 6 130984969 130986863 ECH