Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03645 ATGTCCCTTGAAGACTCTCTAAGATCCCTTTCTCTTGATTACCTAAACCTCCTCATCAACGGACAAGCCTTCAGCGACGTCGTTTTCAGCGTCGAGGGCCGATTAGTCCACGCTCACAGATGCATCTTAGCAGCAAGGAGTCTCTTCTTCAGAAAATTCTTCTGTGGGCCAGACCCACCTGCCGGACTCGACCCTTCAGGCAACCGAGTCAACTCAGCAACAAGGTCTGGCGTCATACCCGTTAACTCGGTCGGTTACGAGGTTTTCTTGTTGATGCTTCAGTTTCTCTACAGTGGTCAAGTTTCTATTGTTCCTCAGAAACATGAACCTAGGCCTAATTGTGGTGACCGTGGCTGTTGGCATACGCATTGTACATCGGCCGTTGATCTCGCTCTTGATACTCTCTCCGCCGCGAGATACTTCGGCGTTGAACAGCTTGCATTGCTCACTCAGAAACAACTTGCTAGCATGGTGGAAAAAGCTTCAATTGAAGATGTAATGAAAGTGCTACTAGCATCAAGAAAACAAGACATGCACCAGCTATGGACAACATGTTCTCACCTCGTCGCGAAATCGGGTCTTCCTCCGGAAGTGCTAGCGAAACACCTTCCTATAGACATCATAGCTAAAATCGAAGAGCTTCGAATGAAATCATCCTTATCACGCCGTTCCCTAATCCCTCACCACCACCACAATCCGCACCATCACCACGATCACCTCACCGCAGCAGCAGACCTCGAAGACCAAAAGATCCGTCGGATGAGACGTGCCCTCGACTCCTCAGACGTCGAGCTAGTTAAACTCATGGTAATGGGAGAAGGACTGAACCTCGACGAAGCATTAGCATTACCTTATGCAGTTGAGAGTTGCAGTAGAGAAGTGGTGAAAGCGTTGTTAGAACTCGGTGCAGCTGATGTTAACTTCCCGGCCGGTCCAACTGGTAAAACCCCGCTTCACATTGCGGCCGAGATGGTCTCGCCCGACATGGTCGCGGTCCTGCTCGACCACCACGCAGACCCGAATGTAAGAACAGTAGACGGTGTCACACCTTTGGACATTCTCAGAACCCTAACCTCAGACTTTCTCTTCAAAGGTGCTGTCCCTGGATTAACCCACATAGAACCAAACAAACTAAGGCTGTGTTTGGAGCTTGTTCAATCTGCAGCTCTTGTCATGTCAAGAGAAGAAGGAAACAACAACAATAATGCCAATAACAACAACACAGGCTCTTCAGGAACAAACATGTACCCTCACCCTCACAATCACATGAATGAAGAACATCATAGTCATCACAACAACAACAGTAACATGGATTCAAGGTTGGTGTATCTTAACCTTGGTGCAAATACTCAAATGAGTACTTCAAGATTGGATTCTGGTGATGATGATCATAATAATCAAAGGGAAGCTATGAATCCATCCATGTATCATCATCATCACTCTCATGACTACTAA 1455 0.4729 MSLEDSLRSLSLDYLNLLINGQAFSDVVFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPAGLDPSGNRVNSATRSGVIPVNSVGYEVFLLMLQFLYSGQVSIVPQKHEPRPNCGDRGCWHTHCTSAVDLALDTLSAARYFGVEQLALLTQKQLASMVEKASIEDVMKVLLASRKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPIDIIAKIEELRMKSSLSRRSLIPHHHHNPHHHHDHLTAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALPYAVESCSREVVKALLELGAADVNFPAGPTGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVMSREEGNNNNNANNNNTGSSGTNMYPHPHNHMNEEHHSHHNNNSNMDSRLVYLNLGANTQMSTSRLDSGDDDHNNQREAMNPSMYHHHHSHDY 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03645 484 CDD BTB_POZ_NPR_plant 8 158 - -
Vivi6g03645 484 SUPERFAMILY Ankyrin repeat 272 356 IPR036770 -
Vivi6g03645 484 SMART BTB_4 25 158 IPR000210 GO:0005515
Vivi6g03645 484 MobiDBLite consensus disorder prediction 395 418 - -
Vivi6g03645 484 FunFam regulatory protein NPR5 isoform X1 4 191 - -
Vivi6g03645 484 Pfam Domain of unknown function (DUF3420) 193 255 IPR024228 -
Vivi6g03645 484 FunFam regulatory protein NPR5 isoform X2 244 361 - -
Vivi6g03645 484 Pfam Ankyrin repeats (3 copies) 261 343 IPR002110 GO:0005515
Vivi6g03645 484 MobiDBLite consensus disorder prediction 420 434 - -
Vivi6g03645 484 ProSiteProfiles Ankyrin repeat profile. 313 345 IPR002110 GO:0005515
Vivi6g03645 484 SMART ANK_2a 313 342 IPR002110 GO:0005515
Vivi6g03645 484 SMART ANK_2a 278 308 IPR002110 GO:0005515
Vivi6g03645 484 ProSiteProfiles Ankyrin repeat region circular profile. 313 343 - -
Vivi6g03645 484 SUPERFAMILY POZ domain 8 156 IPR011333 -
Vivi6g03645 484 MobiDBLite consensus disorder prediction 457 484 - -
Vivi6g03645 484 Gene3D - 237 361 IPR036770 -
Vivi6g03645 484 MobiDBLite consensus disorder prediction 395 437 - -
Vivi6g03645 484 Pfam BTB/POZ domain 16 106 IPR000210 GO:0005515
Vivi6g03645 484 MobiDBLite consensus disorder prediction 452 484 - -
Vivi6g03645 484 ProSiteProfiles BTB domain profile. 25 105 IPR000210 GO:0005515
Vivi6g03645 484 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 480 IPR044284 GO:0099402
Vivi6g03645 484 Gene3D Potassium Channel Kv1.1; Chain A 4 191 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03645 Vivi-Chr6 130568322 130572027 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vivi6g03645 BTB 1.1e-14 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03645 K14508 - gmx:100816086 743.036