LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi6g03638	ATGGCGAAGCGATTGATTCCACTGTTCAATCGTGTTTTGGTTGAGAAAATCGTTCCTCCATCAAAAACCAGCGCTGGTATCTTGTTACCTGAGAAATCCTCCAAGCTGAATTCTGGAAAAGTTGTTGCTGTTGGCTCTGGCATTCATGGTAAGGATGGGAAACTTCTTCCTGTTGCTGTAAAAGAAGGTGACACTGTTCTTTTGCCTGAATATGGAGGAACTGAGGTGAAGCTTGATCACAAAGAGTATTATCTGTATAGAGATGACGATATATTGGGAACACTTCATGATTGA	294	0.415	MAKRLIPLFNRVLVEKIVPPSKTSAGILLPEKSSKLNSGKVVAVGSGIHGKDGKLLPVAVKEGDTVLLPEYGGTEVKLDHKEYYLYRDDDILGTLHD	97

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi6g03638	97	PRINTS	10kDa chaperonin signature	61	73	IPR020818	GO:0005524\|GO:0006457\|GO:0044183
	Vivi6g03638	97	PRINTS	10kDa chaperonin signature	5	20	IPR020818	GO:0005524\|GO:0006457\|GO:0044183
	Vivi6g03638	97	PRINTS	10kDa chaperonin signature	82	95	IPR020818	GO:0005524\|GO:0006457\|GO:0044183
	Vivi6g03638	97	PRINTS	10kDa chaperonin signature	26	47	IPR020818	GO:0005524\|GO:0006457\|GO:0044183
	Vivi6g03638	97	SMART	Cpn10_2	4	95	IPR020818	GO:0005524\|GO:0006457\|GO:0044183
	Vivi6g03638	97	Pfam	Chaperonin 10 Kd subunit	5	94	IPR020818	GO:0005524\|GO:0006457\|GO:0044183
	Vivi6g03638	97	PANTHER	10 KDA HEAT SHOCK PROTEIN	1	94	IPR020818	GO:0005524\|GO:0006457\|GO:0044183
	Vivi6g03638	97	FunFam	10 kDa chaperonin, mitochondrial	1	97	-	-
	Vivi6g03638	97	CDD	cpn10	4	95	IPR020818	GO:0005524\|GO:0006457\|GO:0044183
	Vivi6g03638	97	Hamap	Co-chaperonin GroES [groES].	4	96	IPR020818	GO:0005524\|GO:0006457\|GO:0044183
	Vivi6g03638	97	Gene3D	GroES chaperonin	1	97	IPR037124	GO:0006457
	Vivi6g03638	97	SUPERFAMILY	GroES-like	3	96	IPR011032	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi6g03638	Vivi-Chr6	130348678	130350242	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi6g03638	3	96	Calmodulin-binding Proteins	AT5G20720	36.458	2.86e-10	53.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi6g03638	K04078		-	gmx:100306384	181.03