LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi6g03636	ATGGTGGAGAGAAGAAAGCCTCTGGTTCTGTGTTCCACCAAAAATGTCATCAATTCCTTATTGAACTCTTCAACTTCTTCAATCAATGAATTCCCCAATTTGCATTTACCGGTTGGAATTCTCCGATTATCCAACAAATTGCCTTCTCTTGATCACTCTGCACTCATTGCTCTATCCACTTCTCTTCTCAAAAGACTTTCCATCACTTCTGGTTCACCGGTTTTGATAAAAAATGCTGAAATGAACACGCAGAGGATTGCAGTGGCTATTGCTCTTGACCCTCCTAGCAATGACATTGACACCCTTGATATTGATCACTCATTATCCGTTTCTTCTAGAATAATGCTTGTTTTTCCTTCTTGTGATTTTCCTCTCAATGGCCCTTTGTTAAATGGCGAAGTTGCTTATTTGTCTCCTCTTTTGGCCTTTAATCTTAACTTGCACATTTCATGTTTGAAATCGGTTATTCACCATGGCCAAGATGCTTTATCGTCTTATTTCAAATCTCAATGTCAAGTGGGTGATGAGGATGCCGATAAAAGCATTGAGGATTCGGTCATTAATATAGAGTTGGTGCCACTCGCTCAACCTCCGAGATTTGCCTCCCTTTTGAGGGTTGCTTTTGTGAAGATACCAGAATGTGGTATCCTTGATTCCATTAAACCAACTTCAGAGGTTGAAGCCAAAGAACGTCAAGACCTGATTGACTTGGCATTGCAGAAGTACTTTGAAGTTGATAGATATTTGTCAAGCGGAGATGTTTTTGGAATTAGCATTAGTTGGAACTGTAATTCCACTATTTGCATTCCTTGTAACCAAAACACACAAAAGCAAAATGACAACCGTATCTGTTTTAAGGTCATTGCTATGGAACCATCAGATGAACCAGTTCTCCGTGTCAATAAAACCTTAACTGCGTTGGTGTTAGTAGGGAATTCTCAATCTGCCCTTCCTCCAGATTTGTTAATTGCTGGACCAGAAGGGCCTGTGCCCTTGCAAAGAGACACAGTGAAGATCTTGGCTTCAATACTTGCACCAACTTTATGTCCATCAGCACTCTCTTCCAAGTTTAGAGTTTCAGTGTTATTATATGGCTTGGCAGGTTGTGGGAAAAGGACCGTTGTTAGATATGTTGCTTGTCGACTGGGCCTGCATGTGGTCGAATATAACTGTCACGATCTAATGGGTTCCGATAGAGCATCTGTTGCTCTAGCTCAAGCTTTCAAGACTGCTCAAAGATACTCGCCAACAATACTTCTTCTTCGTCATTTTGAGGTATTTCGAGATTCACATTCACCTGAGATTTCACCAAATGATCAAAGAGGCAATGCATCTGAAGTTGCATCAGTTATTAGGAAATTCACTGAGCCAGTTGGTGAACATGATGATAGTAACTCTCTGATGAAATCAAATGGCGAATTTGTGGACAAGAATTCTGAAAAGACAAGCGGGCATCAGGTCCTGTTGATTGCTGCAGCTGACAGTTCAGAGGGTCTACCTTCAACCATCAGACGCTGCTTTAGCCATGAAACAAACATGGGGCCTTTGACAGAAGAGCAAAGGGCAGAAATGCTATTGCATTCACTGCAAAATATTTATGGACTCCACTCTAATACTGATTTAGAGGGTTTTGTAAAAGAATTAGTTGGACAGACATCTGGTTTCATGCCCAGAGATATGTGTGCTTTAATTGCAGATGCTGGTGCCAACTTATTTCCCAGCAGCGATGCTGAAGCAGACAAAGTTGAACCTGAAGGTGCAGATAGTTCTCTTAGTTCAAAGGTGACAGAGGACAACAACGAGTCTGAAGTTTCAGCTCGAAAACCTGGGAAAGAAGACTTGGTGAATGCCTTGGAACGATCAAAGAAAAGAAATGCGTCAGCATTGGGTACTCCAAAGGTTCCAAATGTAAAATGGGACGATGTTGGTGGGCTTGAAGATGTCAAAAAATCAATCCTGGATACTGTTCAGTTGCCTCTCTTGCATAAAGATCTTTTTGCATCTGGGTTACGCAAACGGTCTGGTGTTCTTTTGTATGGTCCTCCTGGAACTGGAAAAACATTATTAGCAAAAGCAGTTGCTACAGAGTGTTCCTTAAATTTTCTTAGTGTGAAGGGTCCTGAACTGATCAACATGTACATAGGCGAGTCTGAGAAAAATGTTCGAGACATTTTTCAGAAGGCCAGATCAGCCCGACCGTGTGTCATCTTCTTTGATGAGCTTGACTCTCTTGCACCAGCTCGGGGAGCTTCTGGAGATTCTGGGGGTGTTATGGATAGAGTGGTTTCGCAGATGCTTGCAGAAATTGACGGCTTAAGTGATTCAACACAGGATCTATTTATTATAGGTGCAAGTAATAGACCAGATTTGATAGACCCGGCACTTCTTCGCCCTGGTCGTTTTGATAAATTGCTATATGTTGGTGTTAACTCTGATGCATCTTACAGAGAGCGGGTACTGAAAGCTCTTACGAGAAAGTTTAAATTGCATGAAGATGTTTCACTTTACTCCATTGCAAAAAAATGTCCACCAAACTTCACCGGCGCAGACATGTATGCCTTGTGTGCAGATGCTTGGTTCCGCGCTGCAAAACGCAAAGTTTTGAATGCAAATCCAGAGTCCTCCAACCCAGATAATGAAGCAAATTCTATTGTTGTTGAATATGATGATTTTGTCCAGGTCTTAGAAGAGCTTCAGCCTTCCCTCTCAACTGCGGAGCTTAAGAAGTACGAGCTTCTTAGAGATCAATTTGAAGGCACCTCTAAATGA	2769	0.4178	MVERRKPLVLCSTKNVINSLLNSSTSSINEFPNLHLPVGILRLSNKLPSLDHSALIALSTSLLKRLSITSGSPVLIKNAEMNTQRIAVAIALDPPSNDIDTLDIDHSLSVSSRIMLVFPSCDFPLNGPLLNGEVAYLSPLLAFNLNLHISCLKSVIHHGQDALSSYFKSQCQVGDEDADKSIEDSVINIELVPLAQPPRFASLLRVAFVKIPECGILDSIKPTSEVEAKERQDLIDLALQKYFEVDRYLSSGDVFGISISWNCNSTICIPCNQNTQKQNDNRICFKVIAMEPSDEPVLRVNKTLTALVLVGNSQSALPPDLLIAGPEGPVPLQRDTVKILASILAPTLCPSALSSKFRVSVLLYGLAGCGKRTVVRYVACRLGLHVVEYNCHDLMGSDRASVALAQAFKTAQRYSPTILLLRHFEVFRDSHSPEISPNDQRGNASEVASVIRKFTEPVGEHDDSNSLMKSNGEFVDKNSEKTSGHQVLLIAAADSSEGLPSTIRRCFSHETNMGPLTEEQRAEMLLHSLQNIYGLHSNTDLEGFVKELVGQTSGFMPRDMCALIADAGANLFPSSDAEADKVEPEGADSSLSSKVTEDNNESEVSARKPGKEDLVNALERSKKRNASALGTPKVPNVKWDDVGGLEDVKKSILDTVQLPLLHKDLFASGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLSDSTQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDASYRERVLKALTRKFKLHEDVSLYSIAKKCPPNFTGADMYALCADAWFRAAKRKVLNANPESSNPDNEANSIVVEYDDFVQVLEELQPSLSTAELKKYELLRDQFEGTSK	922

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi6g03636	922	FunFam	Peroxisome biogenesis protein 6	810	896	-	-
	Vivi6g03636	922	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	635	916	IPR027417	-
	Vivi6g03636	922	PANTHER	AAA-FAMILY ATPASE	47	919	-	-
	Vivi6g03636	922	Gene3D	-	330	535	IPR027417	-
	Vivi6g03636	922	Pfam	ATPase family associated with various cellular activities (AAA)	676	808	IPR003959	GO:0005524\|GO:0016887
	Vivi6g03636	922	Pfam	ATPase family associated with various cellular activities (AAA)	361	511	IPR003959	GO:0005524\|GO:0016887
	Vivi6g03636	922	ProSitePatterns	AAA-protein family signature.	779	797	IPR003960	GO:0005524\|GO:0016887
	Vivi6g03636	922	FunFam	Peroxisomal biogenesis factor 6	634	823	-	-
	Vivi6g03636	922	Gene3D	-	810	896	-	-
	Vivi6g03636	922	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	329	570	IPR027417	-
	Vivi6g03636	922	Gene3D	-	634	911	IPR027417	-
	Vivi6g03636	922	FunFam	Peroxisome biogenesis protein 6	330	514	-	-
	Vivi6g03636	922	SMART	AAA_5	672	812	IPR003593	GO:0016887
	Vivi6g03636	922	SMART	AAA_5	357	517	IPR003593	GO:0016887
	Vivi6g03636	922	CDD	RecA-like_PEX6_r2	648	807	IPR047533	-
	Vivi6g03636	922	MobiDBLite	consensus disorder prediction	577	613	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi6g03636	Vivi-Chr6	130325897	130332285	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi6g03636	642	881	Calmodulin-binding Proteins	AT3G56690	38.589	7.33e-41	160

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi6g03636	K13339		-	gmx:100820183	1448.72