Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03631 ATGGACTCCCAAGAACCCTTTTCCCAATCCGAAACCGACACCTACCTGGCCGGCTTCGTCATGGCCAACATCGTCGGCATAAAGCACTACTCCGGCACAATAACCGGCCGCGAAATGGTCGGCCTACTCCGGGAGCCTCTCAACCCGTACGACTCCAACGCCATCAAAGTTCAAAATACTCAATCCCTCCAAGTCGGTTACATCGAACGCTCCGTCGCCGCTGTTCTTTCGCCGCTCATCGATGCTTCACTCATCCACGTTGAAGCCATCGTTCAAACTAACCCTCGCAACAATAATAACAGTAAATTTCGTATCCCTTGCCAGATTCACGTTTTCGCTCATTTCTCTGCTTTTGATGTTGTTCATGACGCTTTTAACGATTCACCGGTTCACTTCATTTCGCACTCTGATCCTTCTTTTACTTTATCCAACGCCGCCGCTGTTAAAGAAACCCGCGCCGAATCCACCACCACAAAAACCACCAGTAATAAAAACCTAGACCAAGTTTTCAAACTCGTCCGTGAAAACCTAGCTTCCAAAAACCAAATTCATGAACCGTTAAACCCTCCTTCTAACATAATCAAATCAGAGCTTCTTCAACACCAAAAAGAAGCTCTAGGATGGCTTTTCCACCGTGAAAGTTCCGAGGATTTACCGCAGTTTTGGGAAGAGAAGGAGGGGAGTTTCGTCAATGTGTTGACGAATTTCCAAACCAACACTAAACCGGAGCCGCTCCGAGGAGGGATATTCGCGGACGGTATGGGATTAGGGAAGACTTTGACACTGCTTTCGTTGATTGCTTATGATAAGATGAAAATGAAAGGTGGGAAGAAAAGAGGGAGGAGTGTTGTAGAGACGAATGCTACATTGATTGTGTGTCCTCCTTCGGTTATTTCGACTTGGATAACTCAATTGGAAGAGCATACTAACCGTGGTGCGTTGAAGGTTTATATGTATTATGGTGATAGAAGGACTCAAGATGCTGAAGAACTGCGAAAATATGATGTTGTGTTGACTACTTATGCTACTTTGGGAGCTGAGTTGCGGTCGCCGGATACTGCAGTGAAGAAATTGGGGTGGAGGAGAATTGTTTTGGATGAAGCACATATGATTAAGAATGTTAATGCTGCACAGAGTCAGGCTGTTATTGCTTTGAATGCTAAGAGGAGATGGGCTGTTACTGGAACACCTATTCAGAATGGTTCTTATGATTTGTTTTCTCTTATGGCTTTTCTGCATTTTGAGCCTTTTTCAATCAAGAGTTATTGGCAAAGCTTGGTTCAACGCCCTCTTAATCAAGGCAAACAGACAGGGCTCAACAGATTGCAGGTTTTGATGGCGGCAATATCATTACGAAGAACAAAAGACACTGCATTGGTGGGGCTTCCACCTAAGATTGTAGAGACTTGTTATGTTGAACTTTCATGTGAAGAGCGTAAACTCTATGATGAGGTTAAAGATGAAATAAGGTCGCTTATGAACAATGACAGACTAGTGTATAGTTATTCTACTATACTAAGTATGATTCTAAGACTTCGTCAGATCTGTGCTGATTTATCGATGTGCCCTTCGGATTTCAAGGCATGTCTATTTTCTTCAACTGAAATTGAAGATGTTTCAGAGAACCCTGAATTGCTGCAAACATTAATTGGGATGCTACAAGATTGTGAAGATTTTGACTGTCCAATTTGTTTATCTCCCCCATCAGATGTTGTAATTACATGTTGTGCTCATATTTTCTGCCGAGAATGTATTCTGAAAACTCTACAGCGCAGCAACTCTAGCTGTCCACTTTGTCGTCGCTCCCTTTCAGAATCTGAACTATTCTCAGTTCCCTCTCTCAAGACTGATACTACGGAACCGAGTCCACCAGATGTAAGGTCATCCACAAAAGTCTCTACTTTGATAAAGCTTCTTACAGAATCAAGGGATCAAAATCCAGCTACCAAATCTGTTGTATTTTCACAATTCCGAAAGATGCTGCCATTGTTAGAAGAACCTCTGAAAGCTGCCGGCTTTAAAACATTGCGTCTTGATGGGGCAATGAGTGCTAAACAAAGGACTCAAGTTATCGAACAATTTCAACTCTCAGAAGTTGATGAGCCAATGATTCTCCTTGCAAGTCTAAGGGCTTCAAGTACAGGTATAAATCTAACGGCTGCCTCTAGAGTGTACTTAATGGAGCCGTGGTGGAACCCAGCAGTCGAAGAACAGGCAATGGATCGTGTCCACCGCATTGGACAGAAAGAAGAAGTGAAGATTGTTAGACTGATAGCTAAAAATAGCGTTGAAGAGAAAATTTTAATGTTGCAAGAGGAAAAGAAAGAAATAACTAGCCGAGGATCTGGGAGGAGATCAAAGGATATTGTTGGTATGGGCATAGAGGATCTCCGTTTTGTTTTAGGAGAATAG 2412 0.4295 MDSQEPFSQSETDTYLAGFVMANIVGIKHYSGTITGREMVGLLREPLNPYDSNAIKVQNTQSLQVGYIERSVAAVLSPLIDASLIHVEAIVQTNPRNNNNSKFRIPCQIHVFAHFSAFDVVHDAFNDSPVHFISHSDPSFTLSNAAAVKETRAESTTTKTTSNKNLDQVFKLVRENLASKNQIHEPLNPPSNIIKSELLQHQKEALGWLFHRESSEDLPQFWEEKEGSFVNVLTNFQTNTKPEPLRGGIFADGMGLGKTLTLLSLIAYDKMKMKGGKKRGRSVVETNATLIVCPPSVISTWITQLEEHTNRGALKVYMYYGDRRTQDAEELRKYDVVLTTYATLGAELRSPDTAVKKLGWRRIVLDEAHMIKNVNAAQSQAVIALNAKRRWAVTGTPIQNGSYDLFSLMAFLHFEPFSIKSYWQSLVQRPLNQGKQTGLNRLQVLMAAISLRRTKDTALVGLPPKIVETCYVELSCEERKLYDEVKDEIRSLMNNDRLVYSYSTILSMILRLRQICADLSMCPSDFKACLFSSTEIEDVSENPELLQTLIGMLQDCEDFDCPICLSPPSDVVITCCAHIFCRECILKTLQRSNSSCPLCRRSLSESELFSVPSLKTDTTEPSPPDVRSSTKVSTLIKLLTESRDQNPATKSVVFSQFRKMLPLLEEPLKAAGFKTLRLDGAMSAKQRTQVIEQFQLSEVDEPMILLASLRASSTGINLTAASRVYLMEPWWNPAVEEQAMDRVHRIGQKEEVKIVRLIAKNSVEEKILMLQEEKKEITSRGSGRRSKDIVGMGIEDLRFVLGE 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03631 803 Pfam HIRAN domain 20 108 IPR014905 GO:0003676|GO:0008270|GO:0016818
Vivi6g03631 803 CDD SF2_C_SNF 629 758 - -
Vivi6g03631 803 Gene3D - 230 454 IPR038718 -
Vivi6g03631 803 ProSiteProfiles Zinc finger RING-type profile. 561 600 IPR001841 -
Vivi6g03631 803 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 454 802 IPR027417 -
Vivi6g03631 803 SMART HIRAN_2 17 115 IPR014905 GO:0003676|GO:0008270|GO:0016818
Vivi6g03631 803 Pfam Zinc finger, C3HC4 type (RING finger) 558 604 - -
Vivi6g03631 803 ProSitePatterns Zinc finger RING-type signature. 576 585 IPR017907 -
Vivi6g03631 803 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 634 798 IPR001650 -
Vivi6g03631 803 SMART ring_2 561 599 IPR001841 -
Vivi6g03631 803 Coils Coil 760 780 - -
Vivi6g03631 803 SMART ultradead3 194 422 IPR014001 -
Vivi6g03631 803 Pfam Helicase conserved C-terminal domain 631 747 IPR001650 -
Vivi6g03631 803 SUPERFAMILY RING/U-box 551 605 - -
Vivi6g03631 803 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 550 611 IPR013083 -
Vivi6g03631 803 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 239 415 IPR014001 -
Vivi6g03631 803 Gene3D - 8 130 - -
Vivi6g03631 803 Gene3D - 463 793 IPR027417 -
Vivi6g03631 803 SMART helicmild6 662 747 IPR001650 -
Vivi6g03631 803 SMART Ubox_2 558 621 IPR003613 GO:0004842|GO:0016567
Vivi6g03631 803 CDD RING-HC_HLTF 557 608 - -
Vivi6g03631 803 Pfam SNF2-related domain 201 521 IPR000330 GO:0005524|GO:0140658
Vivi6g03631 803 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 453 IPR027417 -
Vivi6g03631 803 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 46 800 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03631 Vivi-Chr6 130231052 130236770 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03631 3 797 RAD5 or RAD16-like Gene Family AT5G05130 57.363 0.0 949
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi6g03631 SNF2_N 1.3e-76 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g03631 6 130231052 130236770 Vivi6g03631 6 130231052 130236770 ECH