Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03626 ATGTCTGAAAGAATTTTCATCGGAAATGAGGCAGACAAAAACTTAAAACGCAAAATGATTGAAGAATCAAACTCAAAACTGAGGAAGGAATCAAAAAATATAACACCATCCTCTGAAGCTGATTCCGAGAAGGATTTACTTGGTAATAACAACAAGTCAACTTCCATTCTGTTAGAGAATGGTGATCATTCAAGTTCTTCTCAAAATGTTATTGCTAAAGTTTTACCTGAGCAAGAAGTGAAGAAATTTTCTTGTCTTTTTTGTGACAAGAAGTTCTCAACTTCTCAAGCGCTTGGGGGACATCAAAACGCTCATAAGCATGAGCGTGTCATGAAAAAACTTGAACGAAAAATGAGGGAGGAAGAAATGGATTCGGCCATAAGGTATCGAACTGGTTTTCCATACCCTTATCCTTATTCAAGCCCTATTCACTATCAAGGGTATCCTTATTTTCGTGGAAATTTGCAGCAACCAATTGGCAATCATATGAACAATATCATGCCTTCTTGGCTTGGTTCTCCATTTGGTGGCTATGGAGGGATGTATATGCCGAATAAATCTGCCCTGCCAACTCCGTTTGTGATGTCAATGCCAAAGGCACCCATCACATCACAACAATTTGGGATGGCTAATTTTTTTGGTGGAAATCAAACTCTTCCGCTTCCAAATCCTCAAAGGTCAAACAATGTGGAATTGAGACTTTCTGTTCAAGCTAATCAAACTCCTTTTTCTGGTGAGGGTGCAGAAGGAAGCTCCAATGCTCAATTTCCTTCATGTGATCTTCCAATAGAAACTCGTGATTTTATTGGAGAAAGTCAACTTCTAGAAGAGCCTCGTGCGTGTTCATCATCAACATTAGAGGAACTCGACTTGAATCTCAAACTTTAA 888 0.3885 MSERIFIGNEADKNLKRKMIEESNSKLRKESKNITPSSEADSEKDLLGNNNKSTSILLENGDHSSSSQNVIAKVLPEQEVKKFSCLFCDKKFSTSQALGGHQNAHKHERVMKKLERKMREEEMDSAIRYRTGFPYPYPYSSPIHYQGYPYFRGNLQQPIGNHMNNIMPSWLGSPFGGYGGMYMPNKSALPTPFVMSMPKAPITSQQFGMANFFGGNQTLPLPNPQRSNNVELRLSVQANQTPFSGEGAEGSSNAQFPSCDLPIETRDFIGESQLLEEPRACSSSTLEELDLNLKL 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03626 295 MobiDBLite consensus disorder prediction 40 63 - -
Vivi6g03626 295 MobiDBLite consensus disorder prediction 17 63 - -
Vivi6g03626 295 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 20 295 IPR044246 GO:0009788
Vivi6g03626 295 Coils Coil 104 124 - -
Vivi6g03626 295 ProSitePatterns Zinc finger C2H2 type domain signature. 85 107 IPR013087 -
Vivi6g03626 295 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 110 IPR013087 -
Vivi6g03626 295 Gene3D Classic Zinc Finger 61 132 - -
Vivi6g03626 295 MobiDBLite consensus disorder prediction 17 39 - -
Vivi6g03626 295 SUPERFAMILY beta-beta-alpha zinc fingers 78 124 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03626 Vivi-Chr6 130067228 130068190 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03626 41 231 C2H2 Transcription Factor Family AT5G25160 30.256 5.53e-12 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi6g03626 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03626 - - vvo:131614653 315.079