Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03619 ATGCTGCACCTGCTGGGGGAGGTGGGAAGCAACGGTTGCGTTGGACGTCGGATCTTCATGACCGATTTGTGGATGCTATTACGCAACTTGGTGGACCAGATAGTGGGAGCAACGCCAAAAGGTGTTCTTAGAGTGATGGGGGTGCCTGGTCTGACCATTTATCATGTTAAAAGTCATTTACAGAAGTATCGTCTGGCGAAGTACTTGCCTGAATCACCAGCTGATGGTAAAGATTCTAAGGATGAGAAAAGGAATTCTGGAGACAGCATTTCTGGCGCTGATTCTTCCCCGGGATTGCAAATCAATGACGCACTACGGATGCAGATGGAGGTTCAAAAACGTTTGCATGAACAACTTGAGGTTCAAAAGCAATTACAGATGAGAATTGAAGCTCAGGGTAAATACTTGCAGAAGATCATAGAGGAACAACAGAAATTAGGCAGCACCTTGGCAGCGTCAGAAACTCCATTGCCCCATGATAAGCAAAATCATTCTGTATCGGAGCCTTCTGGGTCCAGTGATGCCCTTGCAGGCACTTTTCCTCCACATAAAAAACAGAGAATTGATGAAGGTTCAAAGGATGGTTTCACTGCATCCCAAGTTACAAGAAAGACTACACAGAAGAATGATTGTAATGTTGGCTGTTTGGATCCGAACTTGTATGAAGAAGATGCTGGTTTCGGATTTGATTTGGAAACAGAAAATGACGACGACAATGAGAGTGAGCAGTAA 732 0.4467 MLHLLGEVGSNGCVGRRIFMTDLWMLLRNLVDQIVGATPKGVLRVMGVPGLTIYHVKSHLQKYRLAKYLPESPADGKDSKDEKRNSGDSISGADSSPGLQINDALRMQMEVQKRLHEQLEVQKQLQMRIEAQGKYLQKIIEEQQKLGSTLAASETPLPHDKQNHSVSEPSGSSDALAGTFPPHKKQRIDEGSKDGFTASQVTRKTTQKNDCNVGCLDPNLYEEDAGFGFDLETENDDDNESEQ 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03619 243 MobiDBLite consensus disorder prediction 70 99 - -
Vivi6g03619 243 SUPERFAMILY Homeodomain-like 37 65 IPR009057 -
Vivi6g03619 243 NCBIfam myb-like DNA-binding domain, SHAQKYF class 37 66 IPR006447 GO:0003677
Vivi6g03619 243 MobiDBLite consensus disorder prediction 153 214 - -
Vivi6g03619 243 MobiDBLite consensus disorder prediction 193 213 - -
Vivi6g03619 243 Coils Coil 102 122 - -
Vivi6g03619 243 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 37 185 IPR044848 GO:0003700
Vivi6g03619 243 Pfam MYB-CC type transfactor, LHEQLE motif 99 145 IPR025756 -
Vivi6g03619 243 MobiDBLite consensus disorder prediction 71 88 - -
Vivi6g03619 243 Gene3D - 7 69 - -
Vivi6g03619 243 MobiDBLite consensus disorder prediction 153 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03619 Vivi-Chr6 129942841 129947634 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03619 46 223 G2-like Transcription Factor Family AT2G01060 51.934 3.74e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vivi6g03619 Myb_CC_LHEQLE 4.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03619 - - tpra:123889278 371.703