Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03617 ATGTTTCATGCAAAGAAGTTTCCGGAGGTGGCTATGATGCCTCATAAATCTCAAGGGGGAGGAGAAGAACTTGTAGATGTTGGGGTTTTGAGTGGATCTGCTGTGAAAAATGCTGCACCTGCTGGGGGAGGTGGGAAGCAACGGTTGCGTTGGACGTCGGATCTTCATGACCGATTTGTGGATGCTATTACGCAACTTGGTGGACCAGATAGAGCAACGCCAAAAGGTGTTCTTAGAGTGATGGGGGTGCCTGGTCTGACCATTTATCATGTTAAAAGTCATTTACAGAAGTATCGTCTGGCGAAGTACTTGCCTGAATCACCAGCTGATGGTAAAGATTCTAAGGATGAGAAAAGGAATTCTGGAGACAGCATTTCTGGCGCTGATTCTTCCCCGGGATTGCAAATCAATGACGCACTACGGATGCAGATGGAGGTTCAAAAACGTTTGCATGAACAACTTGAGGTTCAAAAGCAATTACAGATGAGAATTGAAGCTCAGGGTAAATACTTGCAGAAGATCATAGAGGAACAACAGAAATTAGGCAGCACCTTGGCAGCGTCAGAAACTCCATTGCCCCATGATAAGCAAAATCATTCTGTATCGGAGCCTTCTGGGTCCAGTGATGCCCTTGCAGGCACTTTTCCTCCACATAAAAAACAGAGAATTGATGAAGGTTCAAAGGATGGTTTCACTGCATCCCAAGTTACAAGAAAGACTACACAGAAGAATGATTGTAATGTTGGCTGTTTGGATCCGAACTTGTATGAAGAAGATGCTGGTTTCGGATTTGATTTGGAAACAGAAAATGACGACGACAATGAGAGTGAGCAGTAA 837 0.4444 MFHAKKFPEVAMMPHKSQGGGEELVDVGVLSGSAVKNAAPAGGGGKQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRLAKYLPESPADGKDSKDEKRNSGDSISGADSSPGLQINDALRMQMEVQKRLHEQLEVQKQLQMRIEAQGKYLQKIIEEQQKLGSTLAASETPLPHDKQNHSVSEPSGSSDALAGTFPPHKKQRIDEGSKDGFTASQVTRKTTQKNDCNVGCLDPNLYEEDAGFGFDLETENDDDNESEQ 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03617 278 FunFam Myb family transcription factor 45 103 - -
Vivi6g03617 278 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 45 220 IPR044848 GO:0003700
Vivi6g03617 278 Coils Coil 137 157 - -
Vivi6g03617 278 SUPERFAMILY Homeodomain-like 46 100 IPR009057 -
Vivi6g03617 278 MobiDBLite consensus disorder prediction 106 123 - -
Vivi6g03617 278 MobiDBLite consensus disorder prediction 228 248 - -
Vivi6g03617 278 Pfam MYB-CC type transfactor, LHEQLE motif 134 180 IPR025756 -
Vivi6g03617 278 Gene3D - 45 104 - -
Vivi6g03617 278 NCBIfam myb-like DNA-binding domain, SHAQKYF class 46 101 IPR006447 GO:0003677
Vivi6g03617 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 46 103 IPR017930 -
Vivi6g03617 278 Pfam Myb-like DNA-binding domain 49 99 IPR001005 -
Vivi6g03617 278 MobiDBLite consensus disorder prediction 188 209 - -
Vivi6g03617 278 MobiDBLite consensus disorder prediction 105 135 - -
Vivi6g03617 278 MobiDBLite consensus disorder prediction 188 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03617 Vivi-Chr6 129942841 129948171 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03617 28 188 G2-like Transcription Factor Family AT3G13040 50.909 1.97e-50 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vivi6g03617 Myb_DNA-binding 2.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03617 - - tpra:123889278 486.878