Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03616 ATGTTTCATGCAAAGAAGTTTCCGGAGGTGGCTATGATGCCTCATAAATCTCAAGGGGGAGGAGAAGAACTTGTAGATGTTGGGGTTTTGAGTGGATCTGCTGTGAAAAATGCTGCACCTGCTGGGGGAGGTGGGAAGCAACGGTTGCGTTGGACGTCGGATCTTCATGACCGATTTGTGGATGCTATTACGCAACTTGGTGGACCAGATAGAGCAACGCCAAAAGGTGTTCTTAGAGTGATGGGGGTGCCTGGTCTGACCATTTATCATGTTAAAAGTCATTTACAGAAGTATCGTCTGGCGAAGTACTTGCCTGAATCACCAGCTGATGATTCTAAGGATGAGAAAAGGAATTCTGGAGACAGCATTTCTGGCGCTGATTCTTCCCCGGGATTGCAAATCAATGACGCACTACGGATGCAGATGGAGGTTCAAAAACGTTTGCATGAACAACTTGAGGTTCAAAAGCAATTACAGATGAGAATTGAAGCTCAGGGTAAATACTTGCAGAAGATCATAGAGGAACAACAGAAATTAGGCAGCACCTTGGCAGCGTCAGAAACTCCATTGCCCCATGATAAGCAAAATCATTCTGTATCGGAGCCTTCTGGGTCCAGTGATGCCCTTGCAGGCACTTTTCCTCCACATAAAAAACAGAGAATTGATGAAGGTTCAAAGGATGGTTTCACTGCATCCCAAGTTACAAGAAAGACTACACAGAAGAATGATTGTAATGTTGGCTGTTTGGATCCGAACTTGTATGAAGAAGATGCTGGTTTCGGATTTGATTTGGAAACAGAAAATGACGACGACAATGAGAGTGAGCAGTAA 831 0.4452 MFHAKKFPEVAMMPHKSQGGGEELVDVGVLSGSAVKNAAPAGGGGKQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRLAKYLPESPADDSKDEKRNSGDSISGADSSPGLQINDALRMQMEVQKRLHEQLEVQKQLQMRIEAQGKYLQKIIEEQQKLGSTLAASETPLPHDKQNHSVSEPSGSSDALAGTFPPHKKQRIDEGSKDGFTASQVTRKTTQKNDCNVGCLDPNLYEEDAGFGFDLETENDDDNESEQ 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03616 276 FunFam Myb family transcription factor 45 103 - -
Vivi6g03616 276 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 45 218 IPR044848 GO:0003700
Vivi6g03616 276 MobiDBLite consensus disorder prediction 186 207 - -
Vivi6g03616 276 NCBIfam myb-like DNA-binding domain, SHAQKYF class 46 101 IPR006447 GO:0003677
Vivi6g03616 276 MobiDBLite consensus disorder prediction 106 133 - -
Vivi6g03616 276 SUPERFAMILY Homeodomain-like 46 100 IPR009057 -
Vivi6g03616 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 46 103 IPR017930 -
Vivi6g03616 276 Coils Coil 135 155 - -
Vivi6g03616 276 MobiDBLite consensus disorder prediction 186 250 - -
Vivi6g03616 276 Pfam MYB-CC type transfactor, LHEQLE motif 132 178 IPR025756 -
Vivi6g03616 276 MobiDBLite consensus disorder prediction 226 246 - -
Vivi6g03616 276 MobiDBLite consensus disorder prediction 106 121 - -
Vivi6g03616 276 Pfam Myb-like DNA-binding domain 49 99 IPR001005 -
Vivi6g03616 276 Gene3D - 45 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03616 Vivi-Chr6 129942841 129948173 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03616 46 178 G2-like Transcription Factor Family AT4G13640 55.782 7.10e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vivi6g03616 Myb_DNA-binding 2.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03616 - - tpra:123889278 477.633