Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03614 ATGGTGAGAAAGAGAAAGCTCGTCGCTAAATCTTCTCAACCAGAGGAACCACCACTCAAACAGCATCACTCTCAGCCCGAACCCGAACCGGAACCCTATATTCCCACCGAAGAATACGAAGAAGTCGAGGAGGAAGTTGAGTATGAAGAAGTTGAGGAAGTAGAGGAGGAGGAAGAGGAGGTGGAGGAGGAGGAAGAAGAAGACGGAGGAGAACAAGCTCAAGGTGGAGAATACGTAGAAGAAGACGATGAACCGATTAAGGATCTAGTGGAGCCTTTCACCAAGGAACAGATCGCGACTCTCCTTTGCGATGCGGCGGCTAAACACCGTGATGTCGCGGACCGAATCAGGAAGATTGCGGATGGAGATGCTTCGCATAGGAAGATTTTTGTTCATGGTTTGGGGTGGGACACGACTTCCGCAACGCTGATTAACGCCTTTTCGCAATACGGTGAAATTGAGGATTGTAAGGCTGTTACTGATAAGGTATCTGGGAAATCTAAGGGTTATGGGTTTATTCTTTTTAAGAAGAGGAGTGGGGCGAGGAATGCTTTGAAGGAGCCGCAGAAGAAGATTGGGAACCGGATGACGGCGTGTCAGCTGGCGTCTATTGGTCCTGTGCAGCAGACTCCGCAACCCACTACACAGTTGGTGCCACCAGGGTCGGAGTATACGCAGAGGAAGATTTATATTAGTAATGTTGGTCCGGAATTGGATCCGCAGAAGCTGTTTGCTTATTTCTCGAGGTTTGGGGAAATTGAGGAAGGGCCGTTAGGGCTTGACAAGGCGACGGGGAAGCCGAAGGGGTTTTGTTTGTTTGTTTATAAGAGTCCTGAGAGTGCAAGGAGGTCGTTGGAGGAGCCTCATAAGGAATTTGAGGGACATATTTTGCATTGCCAGAGGGCAATTGATGGTCCTAAGGGGGGGAAGACACAGCATCAACCACAACCACAGCAGCAACAACACGTGAGTTCATTGAATCAATTGAACCAACTGAACCCATTGACTCAGAGGACACAATTTCAGAGAAATGACAATGTTGGATATGTTGGTGGTAGTAGTGTTGCAGTTAGCCAACCAGGGCACTTAATGGCGCCGGCAGGACCAACAATTGGGTACAATCAGGCTGCTTCTGCTGCACAGGGGCTGAACCCGGTGCTAACCCCTGCACTTGGACAGGCTTTGACGGCACTACTTGCATCTCAGGGTGCTACTTTGGGGCTGAGTGATTTGTTGGGGAGTCTTGGAACAAGTAATGCTCTTAATCATGGCGGTGTTCCTGCTGCAGGTCATGGAGTTCAGAGTGGGTATAGTGCTCAGCCTACTATAAGTCCATCAGTCATGGGATATGGGAATTCGGTACCACAGGTTGGGTTGCAGGTGCAGTATCCAAACCAGCAGATTGGACAGGGTGGTTCTGGTAGAGGGCAATATGGCGGTTCTGCGCCTTACATGGGGCACTAA 1464 0.4973 MVRKRKLVAKSSQPEEPPLKQHHSQPEPEPEPYIPTEEYEEVEEEVEYEEVEEVEEEEEEVEEEEEEDGGEQAQGGEYVEEDDEPIKDLVEPFTKEQIATLLCDAAAKHRDVADRIRKIADGDASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKKRSGARNALKEPQKKIGNRMTACQLASIGPVQQTPQPTTQLVPPGSEYTQRKIYISNVGPELDPQKLFAYFSRFGEIEEGPLGLDKATGKPKGFCLFVYKSPESARRSLEEPHKEFEGHILHCQRAIDGPKGGKTQHQPQPQQQQHVSSLNQLNQLNPLTQRTQFQRNDNVGYVGGSSVAVSQPGHLMAPAGPTIGYNQAASAAQGLNPVLTPALGQALTALLASQGATLGLSDLLGSLGTSNALNHGGVPAAGHGVQSGYSAQPTISPSVMGYGNSVPQVGLQVQYPNQQIGQGGSGRGQYGGSAPYMGH 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03614 487 Gene3D - 208 312 IPR012677 -
Vivi6g03614 487 SMART rrm1_1 228 300 IPR000504 GO:0003723
Vivi6g03614 487 SMART rrm1_1 128 200 IPR000504 GO:0003723
Vivi6g03614 487 SUPERFAMILY RNA-binding domain, RBD 125 209 IPR035979 GO:0003676
Vivi6g03614 487 Gene3D - 35 207 IPR012677 -
Vivi6g03614 487 SUPERFAMILY RNA-binding domain, RBD 211 317 IPR035979 GO:0003676
Vivi6g03614 487 MobiDBLite consensus disorder prediction 465 487 - -
Vivi6g03614 487 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 32 312 - -
Vivi6g03614 487 Coils Coil 39 74 - -
Vivi6g03614 487 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 227 303 IPR000504 GO:0003723
Vivi6g03614 487 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 127 204 IPR000504 GO:0003723
Vivi6g03614 487 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 129 195 IPR000504 GO:0003723
Vivi6g03614 487 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 229 297 IPR000504 GO:0003723
Vivi6g03614 487 MobiDBLite consensus disorder prediction 1 82 - -
Vivi6g03614 487 MobiDBLite consensus disorder prediction 8 27 - -
Vivi6g03614 487 MobiDBLite consensus disorder prediction 33 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03614 Vivi-Chr6 129899096 129902301 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03614 223 317 C2H2 Transcription Factor Family AT2G19380 33.333 9.19e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03614 K12741 - gmx:100784200 514.998