Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03611 ATGAATACATTACGTTATCTTTTATTATCCATCCTCTTATTCATCATTCCTGTTGTTGTTGTTGCCATTGCTAATGCAGATGAAGATGCTGATTACATGTCTCAACTGTTGAAAGCTCTCACCCCAACTCCAACAGGCTGGTCTAACAAGACTCACTTTTGCAAATGGAATGGCATTGTTTGCATGTCTGGTCGAGTTGGTGCCATCACACTCCCATCAAGCAACCTCACTGGAACACTCCCTCCCGAACTCTCTCTTACTGATCTCACCCACATCGATCTCCACAACAACTCACTCACCGGTCCTTTGCCTTATTTGTTTCGTCTCTCCCTTCTCCAAACTGCGTCCTTTGGTCACAATAACTTCACCTCCATCCCAGAGGACTGCCTTCGCGGGCTACCAGATCTAAGAACCCTAAACCTCAGCAATAACTTGAATCTCTTACCATGGCTATTTCCTATGAATTTAGGAGATTCATCGTTAATGCAATCCCTCGATCTTGAAGCTACAAATCTCCTAACTACCTTGCCATCAGAAATGTTTGATTGGTTTCCGAGTCTGCATACTGTTTTTCTTTCTCACAACAACATCGCTGGAACACTCCCGGGGTCTCTTGGGAGATCTGTAGTAAGGTATTTACGGTTCAACAATCAAGGAGGGAAGATGAATCGGTTCTCAGGTTCCATTGATGTGATATCATCAATGAAGTTCTTGTCTCAAGCATGGCTTCACAACAACGCCTTCACCGGTCCAATTCCTAACTTGTCTAATTCCAAATATTTGTTTGATTTGCAACTTCACTCAAATATCTTAACTGGTTTGGTTTCACCTTCTTTGTTCCCTCTCTCTACCTTGAAAAATATCTCAATAGATGATAATTTGCTTCAGGGACCGGTGCCTGTGTTTCCTAAGAATATTAAAGCAACTTGGGAACATAACAACTTTTGTGTTGGACCTTGTGATCCACAGGTCACGATTTTGCTTCAGATTTTTGAAGCTTTTGGATTTCCTGCTTATCTTTCAAGTGTAGCAAACGATGCTTGTTCAGAAGGATCATTGTTTATGTGTCAAAGCGGAAAAATTGTGAGCATTGATTTGACGAATCAGAGTTTAACAGGAACTGTCTCTATGGCATTTTCCAATTTAACAAGTTTAGTGAACCTGAATCTTGGTGGCAATAATTTGACAGGTTCAATACCACATAGTCTTGCAACTTTGCCTCAACTCCGGCTTCTTGATGTTTCTGATAATAATCTATCTGGACGAGTTCCCGAATTTTCATCCAAGGTGAAGTTAATTACCACAGGCAATACTTTGCTTGGCCGAGGTGGAGGAGAAAATGCAACTGATTCTCATCATGGAGGTTCATCTAAAACAGCAGGGTTTAGACCTCTTTGGATTGCAGGGGCATCAATGTTTAGTGTAGGAATTGTAATATTTATTATGATTATTTGTAAACGTAAGAGATATTCTATTACAGTAAAGAGGTTGATCTTCAGAAGTACAAGGAAATCTATTGACTCCAATGTGGAGGATTTTATACAAACTTATAACTTGTCAGTACCAATTAAGCAATATAGATACTCAGAAGTGAAAAGAATGACAAATTCTTTCAGAGATCAATTAGGTCGAGGAGGATATGGTATTGTGTACAAAGCAAGTTTACCCGATGGTCGTCAAGTGGCCGTGAAAATGATAAACCAGTCAAAGGGAAATGGAGAAGAATTCATAAACGAAGTTGCTAGCATTAGTAGAACTTCACATGTGAACATCGTCTCTCTAGTGGGTTTTTGTTATGAGAATAAAAGAGCACTCATATATGAATTCATGCCCAACGGTTCACTAGACAAGTATATCTTTAAGAATGGATTTCCGGATGCTATTTGTAACTTGGATTGGAATACATTGTACCAAATTGCAGTAGGAATTGCTCGAGGGCTAGATTACTTGCATCAAGGATGTATTTCAAGAATTTTGCATCTAGATATCAAACCTCAAAATATTCTTTTGGATGAAGATTTTTGTCCAAAAATTTCTGATTTTGGACTTGCTCAAATTTGTCGAAAGAATGATAATATTGTGTCCATACTTGGCACAAGAGGAACCATAGGATATATAGCTCCCGAAGTATTTAGTCGAACATTTGGTGCAATTTCTCACAAGTCTGATGTATACAGTTATGGTATGTTGATTCTGGAAATAATTGGTGGAAGAAAAAATCATGACACTGGTGGATCATGTACTTCTGAAATGTACTTTCCAGATTGGATTTATAAGGATCTTTAG 2286 0.388 MNTLRYLLLSILLFIIPVVVVAIANADEDADYMSQLLKALTPTPTGWSNKTHFCKWNGIVCMSGRVGAITLPSSNLTGTLPPELSLTDLTHIDLHNNSLTGPLPYLFRLSLLQTASFGHNNFTSIPEDCLRGLPDLRTLNLSNNLNLLPWLFPMNLGDSSLMQSLDLEATNLLTTLPSEMFDWFPSLHTVFLSHNNIAGTLPGSLGRSVVRYLRFNNQGGKMNRFSGSIDVISSMKFLSQAWLHNNAFTGPIPNLSNSKYLFDLQLHSNILTGLVSPSLFPLSTLKNISIDDNLLQGPVPVFPKNIKATWEHNNFCVGPCDPQVTILLQIFEAFGFPAYLSSVANDACSEGSLFMCQSGKIVSIDLTNQSLTGTVSMAFSNLTSLVNLNLGGNNLTGSIPHSLATLPQLRLLDVSDNNLSGRVPEFSSKVKLITTGNTLLGRGGGENATDSHHGGSSKTAGFRPLWIAGASMFSVGIVIFIMIICKRKRYSITVKRLIFRSTRKSIDSNVEDFIQTYNLSVPIKQYRYSEVKRMTNSFRDQLGRGGYGIVYKASLPDGRQVAVKMINQSKGNGEEFINEVASISRTSHVNIVSLVGFCYENKRALIYEFMPNGSLDKYIFKNGFPDAICNLDWNTLYQIAVGIARGLDYLHQGCISRILHLDIKPQNILLDEDFCPKISDFGLAQICRKNDNIVSILGTRGTIGYIAPEVFSRTFGAISHKSDVYSYGMLILEIIGGRKNHDTGGSCTSEMYFPDWIYKDL 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03611 761 Pfam Leucine rich repeat 89 144 IPR001611 GO:0005515
Vivi6g03611 761 Pfam Leucine rich repeat 363 419 IPR001611 GO:0005515
Vivi6g03611 761 ProSitePatterns Serine/Threonine protein kinases active-site signature. 658 670 IPR008271 GO:0004672|GO:0006468
Vivi6g03611 761 Gene3D Ribonuclease Inhibitor 323 443 IPR032675 -
Vivi6g03611 761 SMART serkin_6 536 753 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g03611 761 Gene3D Phosphorylase Kinase; domain 1 509 609 - -
Vivi6g03611 761 ProSitePatterns Protein kinases ATP-binding region signature. 542 564 IPR017441 GO:0005524
Vivi6g03611 761 Pfam Leucine rich repeat N-terminal domain 26 61 IPR013210 -
Vivi6g03611 761 SUPERFAMILY L domain-like 55 441 - -
Vivi6g03611 761 SUPERFAMILY Protein kinase-like (PK-like) 512 744 IPR011009 -
Vivi6g03611 761 Gene3D Transferase(Phosphotransferase) domain 1 610 760 - -
Vivi6g03611 761 FunFam Leucine-rich repeat receptor-like kinase 322 443 - -
Vivi6g03611 761 Pfam Protein tyrosine and serine/threonine kinase 538 736 IPR001245 GO:0004672|GO:0006468
Vivi6g03611 761 ProSiteProfiles Protein kinase domain profile. 536 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g03611 761 PANTHER OSJNBA0070M12.3 PROTEIN 11 745 - -
Vivi6g03611 761 Gene3D Ribonuclease Inhibitor 27 322 IPR032675 -
Vivi6g03611 761 FunFam Os07g0541700 protein 610 702 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03611 Vivi-Chr6 129847205 129850369 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03611 491 761 Receptor kinase-like Gene Family AT4G18250 57.609 6.20e-106 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vivi6g03611 PK_Tyr_Ser-Thr 6.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03611 K00924 - vvo:131612229 672.93