Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03610 ATGGTTAAGGGTTTGCACAGCCAAAATCTCCCCGCCGATGTAGCACATGTCATCGATCAGCTAGAGCGCCACTGCTTGGCTCCCGATGGATCTCTCATCTCCAAGCCTCTCTACAACAATCTACAACTCGATAGAGAGGAAATGTGCAGGGAACGACTTCTCGAAGCCATGTATCTCCATGCCTCTTTTGAAGAGGAATCTGGATTTCTTCAGTTTGGAACATCATTAACATCAAACGATGCTAAGGAAATACAGAAATTTCTTGACCAAGCTGTGAGTGAAAGTTGTGAAGGATTAATTTTTAAACCATTGAGTAAAGGTGCTATATATGTAACTTCCCAGAAGTCGCGCATCTGGCTAAAACTGAAGACTATCAGAATAAGTAGATACTGTTCTCTTTCCCCTTAG 408 0.4265 MVKGLHSQNLPADVAHVIDQLERHCLAPDGSLISKPLYNNLQLDREEMCRERLLEAMYLHASFEEESGFLQFGTSLTSNDAKEIQKFLDQAVSESCEGLIFKPLSKGAIYVTSQKSRIWLKLKTIRISRYCSLSP 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03610 135 Pfam ATP dependent DNA ligase domain 38 123 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Vivi6g03610 135 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 47 124 - -
Vivi6g03610 135 Gene3D DNA ligase/mRNA capping enzyme 33 124 - -
Vivi6g03610 135 ProSiteProfiles ATP-dependent DNA ligase family profile. 58 135 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Vivi6g03610 135 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 57 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03610 Vivi-Chr6 129838557 129842645 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03610 38 123 Core DNA Replication Machinery Family AT1G08130 45.977 5.54e-19 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03610 K10747 K16587 vvo:131604258 108.612