Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03609 ATGCATTCTAAATCAACCATGAATACATTACGTTATCTTTTTTTATCCATCCTCTTATTCATCATTCCGGTTGTGGTTGCTGTTGCTAATGCAGATGAAGGTGATGATTACATGTCTCAACTTTTGAAAGCTCTCACCCCAACTCCAACAGGTTGGTCTAACAAAACTCACTTTTGCAAATGGAACGGCGTTGTTTGCATGTCAGGTCGAGTTAGTGCCATCACACTCCCATCATCCAACCTCACTGGAATACTCCCTCCCGATCTCGACTCTCTTATTGATCTCGCCCACATCGATCTCCACAACAACTCACTCACAGGTCAGTTCCCTAATTTGTTTGGTCTCTCCCTTCTCCAAACTGCATCCTTTGGTCACAATAAGTTCACCTCCATTCCAGAGGATTGCTTTCGCGGGCTACCACATCTCAGAACGCTAAACCTCAGTAATAACTTGAAACTCGTACCATGGTTATTCCCTAAGAATTTAAGAGATTCATCATTGATGCAAACCCTCGATCTCGAAGCTACAAATATCCTAGCAACCTTGCCATCAGAAATGTTCGATTGGTTTCCAAGTCTGCATACTGTTTTTCTTTCTCACAACAACATGACTGGAACACTCCCGGTGTCTCTTGGGAAATCTGCCGTAAGGTATTTACGGTTCAACAACCAAGGAGGGAAGATGGACCGGTTCTCAGGTTCCATTGATGTGATATCGTCAATGAAGTTCTTGTCTCAAGCATGGCTTCACAACAACGCCTTCACCGGTCCAATTCCTAACTTGTCTAACTCCAAATATTTGTTTGATTTGCAACTTCACTCAAATATCTTAACTGGTTTGGTTATACCTTCTTTGTTCCCTCTCTCTACCTTGAAAAATATCTCAATAGATGATAATTTGCTTCAGGGACCGGTGCCTGTGTTTCCTAAGAATATTAAAGCAACTTGGGAAGATAACAACTTTTGCGTTGGACCATGTGATCCACGGGTCACGATTTTGCTTCAAATTTTTGAAGCTTTTGGATATCCTGCTTATCTTTCAAGTGAAGTAAACCATGCTTGTTCAGAAGGATCATTGTTTATGTGTCAAAGCGGAAAAATCGTGAGCGTTGATTTGAGGAATCAGAGTTTAACAGGAACTATCTCTATGGCATTTTCCAATTTAACAAGTTTAGTGAACTTGAATCTTGGTGGCAATAATTTGACAGGTTCAATACCACATAGTCTTGCAACTTTGACTCAACTCCGACTTCTTGATGTTTCTGATAATAATCTATCTGGACGAGTTCCCGAATTTTCATCCAAGGTGAAGTTAATTACCACAGGCAATACTTTGCTTGGACGAGGCGGAGGCACATCAAAAACAGCAGGGTTTAGACCTCTTTGGATTGCAGGGGCATCAATGTTCAGTGTTGGAATTGTAATATTTATTGTGATTATTTGTAAACGTAAGAGGTATTCCATTACAGTAAAGAGGTTGATCTTCAGAAGTACAAGGAAATCTATAGACTACAATGTGGAGGATTTTATACAAACTTATAACTTGTCGGTACCAATTAAGCAATATAGATACGCAGAAGTGAAAAGAATGACAAATTCTTTCAAAGATCAATTAGGTCGAGGAGGATATGGTATTGTGTACAAAGCAAGTTTACCTGATGGTCGTCAAGTGGCAGTGAAAATGATAAACGAGTCAAAGGGAAATGGAGAAGAATTCATAAACGAAGTTGCTAGCATTAGTCGAACTTCACATGTGAACATTGTCTCACTAGTGGGTTTTTGTTATGGGAATAAAAGAGCACTCATATATGAGTTCATGCCCAATGGTTCACTAGACAAGTATATCTTCAAAAATGGATTTCCGGATGCTATTTGTAATTTGGATTGGAATACAATGTACCAAATTGCAGTAGGAATCGCTCGAGGGCTAGACTACTTGCATCAAGGATGTATTTCAAGAATTTTGCATCTTGATATCAAACCTCAGAATATTCTTTTAGATGAAGATTTTTGTCCAAAAATTTCTGATTTTGGACTAGCTCAAATTTGTCGAAGGAATGATAGTATTGTGTCCATACTTGGCACACGGGGAACTATAGGATATATAGCTCCTGAAGTATTTAGTCGAACATTTGGTGCAATTTCTCACAAGTCTGATGTATATAGTTATGGTATGTTGATTCTAGAAATTATTGGTGGAAGAAAAAATTATGACACTGTTGGATCATGTACTTCTGAAATGTACTTTGCAGATTGGATTTATAAGGATCTTCAGTTAAGCAATAACCTTGTGAACGGTTTAGCATACTCAGAGGAAGAAAGGGATTTGATAAGAAAGATTACTATGATTAGTCTATGGTGCATTCAAACAAATCCATCTGATAGACCATCGATGAATAGAGTAATAGAAATGCTACAAGGACCACTTGAGTCGATAGCATATCCTCCAAAACCTTTCTTATATTCTCCTGAAATGCTATCATTACAAACTTCGTATGAGTATTCCAATAATTTGATAGGGGAAAATTCAACAACCTTACTGAAGAATGGTTCCACAAAATCAAATAACTTCTGCAAAGACACAAGTGAAAATATTAGTGTAATGTAA 2607 0.3813 MHSKSTMNTLRYLFLSILLFIIPVVVAVANADEGDDYMSQLLKALTPTPTGWSNKTHFCKWNGVVCMSGRVSAITLPSSNLTGILPPDLDSLIDLAHIDLHNNSLTGQFPNLFGLSLLQTASFGHNKFTSIPEDCFRGLPHLRTLNLSNNLKLVPWLFPKNLRDSSLMQTLDLEATNILATLPSEMFDWFPSLHTVFLSHNNMTGTLPVSLGKSAVRYLRFNNQGGKMDRFSGSIDVISSMKFLSQAWLHNNAFTGPIPNLSNSKYLFDLQLHSNILTGLVIPSLFPLSTLKNISIDDNLLQGPVPVFPKNIKATWEDNNFCVGPCDPRVTILLQIFEAFGYPAYLSSEVNHACSEGSLFMCQSGKIVSVDLRNQSLTGTISMAFSNLTSLVNLNLGGNNLTGSIPHSLATLTQLRLLDVSDNNLSGRVPEFSSKVKLITTGNTLLGRGGGTSKTAGFRPLWIAGASMFSVGIVIFIVIICKRKRYSITVKRLIFRSTRKSIDYNVEDFIQTYNLSVPIKQYRYAEVKRMTNSFKDQLGRGGYGIVYKASLPDGRQVAVKMINESKGNGEEFINEVASISRTSHVNIVSLVGFCYGNKRALIYEFMPNGSLDKYIFKNGFPDAICNLDWNTMYQIAVGIARGLDYLHQGCISRILHLDIKPQNILLDEDFCPKISDFGLAQICRRNDSIVSILGTRGTIGYIAPEVFSRTFGAISHKSDVYSYGMLILEIIGGRKNYDTVGSCTSEMYFADWIYKDLQLSNNLVNGLAYSEEERDLIRKITMISLWCIQTNPSDRPSMNRVIEMLQGPLESIAYPPKPFLYSPEMLSLQTSYEYSNNLIGENSTTLLKNGSTKSNNFCKDTSENISVM 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03609 868 FunFam PR5-like receptor kinase 606 815 - -
Vivi6g03609 868 Pfam Leucine rich repeat 369 425 IPR001611 GO:0005515
Vivi6g03609 868 Pfam Leucine rich repeat 95 150 IPR001611 GO:0005515
Vivi6g03609 868 Pfam Protein tyrosine and serine/threonine kinase 534 805 IPR001245 GO:0004672|GO:0006468
Vivi6g03609 868 Gene3D Phosphorylase Kinase; domain 1 496 605 - -
Vivi6g03609 868 SMART serkin_6 532 809 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g03609 868 SUPERFAMILY L domain-like 57 434 - -
Vivi6g03609 868 ProSitePatterns Serine/Threonine protein kinases active-site signature. 654 666 IPR008271 GO:0004672|GO:0006468
Vivi6g03609 868 Gene3D Ribonuclease Inhibitor 38 326 IPR032675 -
Vivi6g03609 868 ProSitePatterns Protein kinases ATP-binding region signature. 538 560 IPR017441 GO:0005524
Vivi6g03609 868 ProSiteProfiles Protein kinase domain profile. 532 820 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g03609 868 FunFam Leucine-rich repeat receptor-like kinase 328 449 - -
Vivi6g03609 868 Gene3D Ribonuclease Inhibitor 328 449 IPR032675 -
Vivi6g03609 868 SMART LRR_typ_2 412 434 IPR003591 -
Vivi6g03609 868 SMART LRR_typ_2 388 411 IPR003591 -
Vivi6g03609 868 SMART LRR_typ_2 115 138 IPR003591 -
Vivi6g03609 868 SMART LRR_typ_2 139 160 IPR003591 -
Vivi6g03609 868 SUPERFAMILY Protein kinase-like (PK-like) 510 805 IPR011009 -
Vivi6g03609 868 Gene3D Transferase(Phosphotransferase) domain 1 606 813 - -
Vivi6g03609 868 PANTHER OSJNBA0070M12.3 PROTEIN 17 811 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03609 Vivi-Chr6 129832559 129835695 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03609 519 824 Receptor kinase-like Gene Family AT5G38280 59.615 2.54e-125 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vivi6g03609 PK_Tyr_Ser-Thr 9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03609 - K00924 vvo:131612229 783.097