Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03603 ATGACACTCTCTCACCAAAATGAAGACTCACAAATTCTTCTCAACCAAATTGGAAATCAAGGTCTCACCAAACAGATTCTCACTAAAGGTGTCTCTTGGCAAACTCCATCCTCAGGAGATGAAGTTCAAGTTCATTTTCGAGGACATGTTGAAAATGGACCATCTCTTGAATCCAGTTATGATAAAGGCTCCTCTTTTCATTTCAAATTAGGCCAAGGTGAAGTAATCAAAGGTTGGGATGAAGGAGTTGCTACTATGAAAAAAGGGGAGAGAGCCATCTTCAAAATACCACCTGCCTTAGCGTATGGGGAAGTTGGTTCTTCACCGTTGATTCCTCCGAATGCAACTCTCGTTTTTGAGATTGAAATGTTGTGTTGGAGTAGTATCAGAGACTTGACGGGCGATGGAGGAATCATGAAAAAGACGATAAGGGAAGGAGAAGGATGGGCTACTCCAAAAGAGCTTGATGAAGTCCTAGTAAAATATGAAGCAAAGCTTGAAAATGGGATGCTTATTAAGTCTGATAAAGGCGTGGATTTTAATGTAAGTGATGGATATCTATGTCCAGCCATGAGCATAGCAGTAAAGACAATGAGAAAAGGCGAGGTGGCAGAGCTTTCTACAAAATTCTTCTATGGTCTTAGTCAAAATTCAAATAGAATCATTGAGCTTAATGGTTTACCAGATTCTAATTTAGTTAGCATCAAACTCGAGCTACTATCATGGAAAATTGTGACTGATATCACAGGAGATAAGAAAATACTGAAAAAAATTAATAAACCCGGCGAAGGGTTTGATCGTCCTAACGAAGGATCTCACGCGAAAGTCATATATTTATGCAAAGGAGAAGATGGTACAATTATTGATAGGAAAGGATCAAAGGATGAACCTTTTGAGTTCACAACTCAAGAAGAACAAGTGCATGAGGGTCTAGAAAGAGCAATTATGACAATGAAAAAAGCAGAACAGGCTTTGGTGACTGTCAATGCTGAAAAAACACTTTTTTATGAAGTTGAATTAATTGATTTCATTAAGGAGAAACCATTTTGGAAAATGGATACTCAAGAGAAACTAGAAGCTTGTGAGCAGAAGAAGCATGATGGAAATCTTCAGTTTAAGGCTCAATATTTTAGGCGCGCGTCTGAGAAATATGAAAAGGCTGTAAAATACATTGAATTTGATCACACATTCAGCGACGACGAGAAGCGTCACGCTAACACCTTGAGACTATCATGTAATCTGAACAATGCTGCTTGTAAACTTAAATTAGAGGAGTATACAGAAGCTGCCAAGCTATGCACAAAGGTACTAGAACAAGATCCCTTGAATGTTAAGGCTCTTTATAGAAGATGTCAAGCATATCTTAAAACATCAGACTTGGAGAAAGCTGAAGCTGACATTAAAAGAGCACTGATTATTGATCCAAATAATAGAGACATTAAACTTGAGTACAAAGAGCTCAAACTGAAGCAAAGGGAATACAATAAATATGAAGCTGACATCTTTAGCACAATGGTTTCAAAGATGAATTAG 1533 0.3777 MTLSHQNEDSQILLNQIGNQGLTKQILTKGVSWQTPSSGDEVQVHFRGHVENGPSLESSYDKGSSFHFKLGQGEVIKGWDEGVATMKKGERAIFKIPPALAYGEVGSSPLIPPNATLVFEIEMLCWSSIRDLTGDGGIMKKTIREGEGWATPKELDEVLVKYEAKLENGMLIKSDKGVDFNVSDGYLCPAMSIAVKTMRKGEVAELSTKFFYGLSQNSNRIIELNGLPDSNLVSIKLELLSWKIVTDITGDKKILKKINKPGEGFDRPNEGSHAKVIYLCKGEDGTIIDRKGSKDEPFEFTTQEEQVHEGLERAIMTMKKAEQALVTVNAEKTLFYEVELIDFIKEKPFWKMDTQEKLEACEQKKHDGNLQFKAQYFRRASEKYEKAVKYIEFDHTFSDDEKRHANTLRLSCNLNNAACKLKLEEYTEAAKLCTKVLEQDPLNVKALYRRCQAYLKTSDLEKAEADIKRALIIDPNNRDIKLEYKELKLKQREYNKYEADIFSTMVSKMN 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03603 510 SMART tpr_5 410 443 IPR019734 GO:0005515
Vivi6g03603 510 SMART tpr_5 361 394 IPR019734 GO:0005515
Vivi6g03603 510 SMART tpr_5 444 477 IPR019734 GO:0005515
Vivi6g03603 510 ProSiteProfiles TPR repeat profile. 444 477 IPR019734 GO:0005515
Vivi6g03603 510 Gene3D Tetratricopeptide repeat domain 347 504 IPR011990 GO:0005515
Vivi6g03603 510 Gene3D - 244 346 IPR046357 GO:0003755
Vivi6g03603 510 SUPERFAMILY FKBP-like 242 364 - -
Vivi6g03603 510 Coils Coil 311 331 - -
Vivi6g03603 510 SUPERFAMILY FKBP-like 18 126 - -
Vivi6g03603 510 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 39 127 IPR001179 GO:0003755
Vivi6g03603 510 SUPERFAMILY TPR-like 352 507 IPR011990 GO:0005515
Vivi6g03603 510 Gene3D - 10 129 IPR046357 GO:0003755
Vivi6g03603 510 Gene3D - 130 243 IPR046357 GO:0003755
Vivi6g03603 510 Pfam Tetratricopeptide repeat 423 477 - -
Vivi6g03603 510 FunFam Peptidylprolyl isomerase 349 504 - -
Vivi6g03603 510 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 271 331 IPR001179 GO:0003755
Vivi6g03603 510 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 155 243 IPR001179 GO:0003755
Vivi6g03603 510 Coils Coil 480 500 - -
Vivi6g03603 510 FunFam Peptidyl-prolyl cis-trans isomerase 15 127 - -
Vivi6g03603 510 SUPERFAMILY FKBP-like 132 213 - -
Vivi6g03603 510 PANTHER PEPTIDYLPROLYL ISOMERASE 15 128 - -
Vivi6g03603 510 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 151 216 IPR001179 GO:0003755
Vivi6g03603 510 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 35 124 IPR001179 GO:0003755
Vivi6g03603 510 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 267 331 IPR001179 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03603 Vivi-Chr6 129646652 129650075 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03603 16 509 Calmodulin-binding Proteins AT5G48570 52.031 0.0 543
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g03603 6 129646652 129650075 Vivi6g03603 6 129646652 129650075 ECH