Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03598 ATGGCTGAAGATCAGGGTGATGCAACTCCAAAATTCACTCGTTACTCGTGTGCTTTTTGTGAAAAAGCATACGAAACTCGACAAGCACTAGGAGGACACCAACGTGGTCACAAACACGAACGAAATGTCATACGAGGGATTAAACCTAGGCCAATCCCTCGCGGTTCAAGGGGAAAATTGAGTTTTACCTCAGGAGCTTGCAAGGTTGATATGGAAAATATCAATGCGTTGAAAATACCAAAAGGAGATGAAGTGAAAGAGGCCGATCATCATCAAAATGATGCAAAATCTGAATTTACATTTGTTTTACTTCCCATGACAAATGCTCAAATCAACGGGTCAGGGAGTCAACATATTCCTATGACTGAAATTGACTTTGGTCTGGTTTCAAAGAAAGATGCTAATAATGATTCTCATAACGATGACAAAGAGACAAATTTCAATTTAGTCGACTAG 456 0.3969 MAEDQGDATPKFTRYSCAFCEKAYETRQALGGHQRGHKHERNVIRGIKPRPIPRGSRGKLSFTSGACKVDMENINALKIPKGDEVKEADHHQNDAKSEFTFVLLPMTNAQINGSGSQHIPMTEIDFGLVSKKDANNDSHNDDKETNFNLVD 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03598 151 SUPERFAMILY beta-beta-alpha zinc fingers 8 43 IPR036236 -
Vivi6g03598 151 ProSiteProfiles Zinc finger C2H2 type domain profile. 15 42 IPR013087 -
Vivi6g03598 151 ProSitePatterns Zinc finger C2H2 type domain signature. 17 39 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03598 Vivi-Chr6 129503222 129503677 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03598 15 41 C2H2 Transcription Factor Family AT5G27880 62.963 3.67e-07 46.2