Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03597 ATGGAGAATCATAACAAGAGAAAATCGATCATGGTTGAGGAGGGTGATTCAACTCAGAAAATTACTCGTTACTCATGTAGTTTTTGTGAAAAAACATACAAAACAGGCCAAGCACTAGGAGGACATCAACGTGGTCACAAACACGAGCGAAATGTCATACATGGGATGAAGCCTAGGTCAATCCCTCGTCATCCAAGGGGAAAACTGAGTTTTATCACTGGGGCTTGTAAGGTTGATATGGAAAATATCAACGGATGGAAAATACCAGACAAAGATGAAGTGAAAGAGGCTGATCATGATCAAAATGATGCAAAATCTGAATTTAAGTTTGTTTTGCTTCCCATGAAAAATGCTCGAATCAATGGGTCAGGGAGTCAACAAATTCCTAGGACTGAAATTGACTTTTTTTCTGGTTTCAAAGAGGAATGCTAA 432 0.3889 MENHNKRKSIMVEEGDSTQKITRYSCSFCEKTYKTGQALGGHQRGHKHERNVIHGMKPRSIPRHPRGKLSFITGACKVDMENINGWKIPDKDEVKEADHDQNDAKSEFKFVLLPMKNARINGSGSQQIPRTEIDFFSGFKEEC 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03597 143 ProSitePatterns Zinc finger C2H2 type domain signature. 26 48 IPR013087 -
Vivi6g03597 143 ProSiteProfiles Zinc finger C2H2 type domain profile. 24 51 IPR013087 -
Vivi6g03597 143 Pfam C2H2-type zinc finger 24 47 - -
Vivi6g03597 143 SUPERFAMILY beta-beta-alpha zinc fingers 23 51 IPR036236 -
Vivi6g03597 143 MobiDBLite consensus disorder prediction 38 66 - -
Vivi6g03597 143 MobiDBLite consensus disorder prediction 47 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03597 Vivi-Chr6 129480532 129480963 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03597 11 52 C2H2 Transcription Factor Family AT5G25160 40.476 4.20e-07 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03597 - - vvo:131614657 303.138