Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03596 ATGTCTCAAAGAATTTCAATCGGAAATGCAGAAGACAAAATCTTAAAGCAAAAAATGATTGAAGAATCAGAGGCAGCAAAAAAAACGGAATCAAAGAAGGTAATAACATCCTCTGAAGCTGATTCTGAGAGGGGCAAAATGGTAGCAGTCGCAGAGCCAATACTGTATAATGAACCCAAGGAAGCGAAAATATTTCCTTGTCTTTTTTGTGACAAGACATTTTCGAGTTCACAAGCTCTTGGAGGGCATCAAAATGCTCATAAGGAAGAACGTGCCTTAAAAAAAATGGAGCAAAAAAGAATAGAGGAAGAAATGGAGGCCGCCATGAGGTATAGACCTATTTTTCCATACTGTTATCCTTATTCAAACCCTATTCACCATCAAGCATATCCCAATTTATGCGGCAACCTGCAAGCCCTAGTTGGCACTCAGATGAACAATGTAATTTCTACCCGGCTTGATTCTCCATTTATGATGCAAGTTCCAAAGCCACCACTACACCTTGAGATGATTAATTTTTTAGGTGAAAATCAAACTCTTGCATTGCCAATAACTCAAAGGGCAAACCCTGTAGATGATGATGGAGTGGAATTGAGACTTTTTACATCTGGTGAGGGTGTCGAAAGAAATTCAAATGCTGAATTTCCTTCTAATGATCTTACAACTGAAACTCGTGATTTATTTGGAGGAAGCCATGTTCTAGCAGAGACTAATGCGTCTTCATCATCAACAACTGAATCAACATCCGAGGAATTTGATTTGAATCTCAAACTTTAA 777 0.3835 MSQRISIGNAEDKILKQKMIEESEAAKKTESKKVITSSEADSERGKMVAVAEPILYNEPKEAKIFPCLFCDKTFSSSQALGGHQNAHKEERALKKMEQKRIEEEMEAAMRYRPIFPYCYPYSNPIHHQAYPNLCGNLQALVGTQMNNVISTRLDSPFMMQVPKPPLHLEMINFLGENQTLALPITQRANPVDDDGVELRLFTSGEGVERNSNAEFPSNDLTTETRDLFGGSHVLAETNASSSSTTESTSEEFDLNLKL 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03596 258 MobiDBLite consensus disorder prediction 22 40 - -
Vivi6g03596 258 SUPERFAMILY beta-beta-alpha zinc fingers 62 93 IPR036236 -
Vivi6g03596 258 Coils Coil 86 106 - -
Vivi6g03596 258 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 92 IPR013087 -
Vivi6g03596 258 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 33 258 IPR044246 GO:0009788
Vivi6g03596 258 MobiDBLite consensus disorder prediction 22 43 - -
Vivi6g03596 258 Pfam C2H2-type zinc finger 65 89 - -
Vivi6g03596 258 MobiDBLite consensus disorder prediction 237 258 - -
Vivi6g03596 258 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
Vivi6g03596 258 MobiDBLite consensus disorder prediction 237 251 - -
Vivi6g03596 258 Gene3D Classic Zinc Finger 54 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03596 Vivi-Chr6 129442621 129443538 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03596 57 102 C2H2 Transcription Factor Family AT5G01860 65.217 2.44e-11 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi6g03596 zf-C2H2_6 2.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03596 - - vvo:131614656 504.982