Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03595 ATGGCTCAAAGAATTTCAATCGGAAATGCAGAAGACAAAATTTTAAAGCAAAAAATGATTGAAGAATCAGAGGCATCACAAAAAAATGAATCAAAGAATGTAATAACATCCTCTGAAGCTGATTCTGAGAAGGGCAAAATGGTAGCAGTCCCAGAGACAATACTGTATAATGAACCCAAGGAAGCAAAAATATTTCCTTGTCTTTTTTGTGACAAGACATTTTCGAGTTCACAAGCTCTTGGAGGGCATCAAAATGCTCATAAGGAAGAACGTGCCTTAAAAAAAATGGAGCAAAAAAGAATAGAGGAAGAAATGGAGGCCGCCATGAGGTATAGACCTATTTTTCCATACTGTTATCCTTATTCAAACCCTATTCACCATCAAGCATACCCCAATTTATGCGGCAACTTGCAAGCCCTAGTTGGCCCTCAGATGAACAATGTAATTTCTTCTCGGCTTGATTCTCCATCTGGTAGTTACGGAGGGATGTATATGCCAAATACACCCACTTCACCATCTCCATTTATGATGCAAGCTCCAAAGCCACCACTACACCTTGAGATGATTAATTTTTTAGGTGGAAATCAAACTCAAAGGGCAAACACTGTAGATGATGGAGTGGAATTGAGACTGTCTAGTCTAGCTAATCAAACCCCTCTATCTGGTGAGGATGCAGTGGAATTGAGACTTTTTACATCTGGGGAGGGTGTCGAAAGAAATTCAAATGCTCAATTTCCTTCTAATGATCTTACAATTGAAACTCGTTATTTATTTGGAGGAAGCCAAGTTCTAGCAGAGACTAATGCGTCTTCATCATCAACAACGGAATCAACATCTGAGAAACTTGATTTGAATCTCAAACTTTAA 867 0.3864 MAQRISIGNAEDKILKQKMIEESEASQKNESKNVITSSEADSEKGKMVAVPETILYNEPKEAKIFPCLFCDKTFSSSQALGGHQNAHKEERALKKMEQKRIEEEMEAAMRYRPIFPYCYPYSNPIHHQAYPNLCGNLQALVGPQMNNVISSRLDSPSGSYGGMYMPNTPTSPSPFMMQAPKPPLHLEMINFLGGNQTQRANTVDDGVELRLSSLANQTPLSGEDAVELRLFTSGEGVERNSNAQFPSNDLTIETRYLFGGSQVLAETNASSSSTTESTSEKLDLNLKL 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03595 288 Coils Coil 86 106 - -
Vivi6g03595 288 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 92 IPR013087 -
Vivi6g03595 288 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 20 288 IPR044246 GO:0009788
Vivi6g03595 288 MobiDBLite consensus disorder prediction 267 288 - -
Vivi6g03595 288 MobiDBLite consensus disorder prediction 18 43 - -
Vivi6g03595 288 Gene3D Classic Zinc Finger 53 112 - -
Vivi6g03595 288 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
Vivi6g03595 288 SUPERFAMILY beta-beta-alpha zinc fingers 62 93 IPR036236 -
Vivi6g03595 288 MobiDBLite consensus disorder prediction 267 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03595 Vivi-Chr6 129387419 129388426 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03595 61 164 C2H2 Transcription Factor Family AT5G25160 40.952 1.52e-11 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi6g03595 zf-C2H2_6 2.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03595 - - vvo:131623757 505.368