Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03594 ATGTCTGAAAGAATTTCTCTTGGAAATACAGAAGACAAATGCTTGAAACGCAAAATGATTGAAGAATCAGAGATAGAATTGAGAAAGGAATCAAAAAACATAGCACCAACCTCTCAAGCTGATTTCGAGAAGGGCAAAATGGCTGAATCTAAGGTAATAACACCATCGACTGAATCTAAAGATTTATTGGCTCCAAGGCTTGACATTAACACCAAGCCAACTTCCAATCTGCTGGAGAATGGTGAACGTTCATGTTCATCCGAAAATGTTATTGGTGAAATTTTACCTAAGGAAGTGAAGGAATATCCCTGTCAATTTTGTGACAAGAAGTTCACAAATTTGCAAGCTCTTGGTGGTCACCAAAACGCTCATAAGAGCGAACGTAACTCAAAAAAAACTAAACAACAAAGGACGGAGGAGACAATCGTTTCCCCCCGAAGGTTTGAACTTACTTATTCAAACCCTTATCCTTATTCACGTCCTAGTCGCTATCAAGGGTCTTCCTATTTTCATGGCAACTTGCAACAACCAATTGGCACTCCAATTGGCACTCATATGGACAATACCACGCCTTCTAGGCTTGGTTTTCCATTCGGTAGCTACGGAGGAGGGGTGTATATGCCCAATACACCCACCCCGCCACCTTCATTTATGATGCCAATGCCAAAGTCACCTCCTGCAATACCACAATTTAGGATGAATAATTATTTTGGTGGAAATCAAACTCCTGTGCTGCCAATTCCTCAAAGGCCAAACATTGTGGAATTGGATTTTTTTCGTCAAGCGAATCAAACTCATTCATCCGGTGAGGGTGCTGAAGGAAGTTCCAATGCTCGATTTCCTTCTCATAATCTTCCAATAACACGTGATTTTATTGGAGAAAATCAACCTCTAGTAGAGTCCAATGTATCTTCTTCATCAACTGTGGAGGAATTCGACTTAAATCTCAAACTTTAA 957 0.4033 MSERISLGNTEDKCLKRKMIEESEIELRKESKNIAPTSQADFEKGKMAESKVITPSTESKDLLAPRLDINTKPTSNLLENGERSCSSENVIGEILPKEVKEYPCQFCDKKFTNLQALGGHQNAHKSERNSKKTKQQRTEETIVSPRRFELTYSNPYPYSRPSRYQGSSYFHGNLQQPIGTPIGTHMDNTTPSRLGFPFGSYGGGVYMPNTPTPPPSFMMPMPKSPPAIPQFRMNNYFGGNQTPVLPIPQRPNIVELDFFRQANQTHSSGEGAEGSSNARFPSHNLPITRDFIGENQPLVESNVSSSSTVEEFDLNLKL 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03594 318 ProSiteProfiles Zinc finger C2H2 type domain profile. 102 129 IPR013087 -
Vivi6g03594 318 MobiDBLite consensus disorder prediction 265 283 - -
Vivi6g03594 318 Gene3D Classic Zinc Finger 86 153 - -
Vivi6g03594 318 MobiDBLite consensus disorder prediction 124 140 - -
Vivi6g03594 318 SUPERFAMILY beta-beta-alpha zinc fingers 100 129 IPR036236 -
Vivi6g03594 318 ProSitePatterns Zinc finger C2H2 type domain signature. 104 124 IPR013087 -
Vivi6g03594 318 MobiDBLite consensus disorder prediction 29 58 - -
Vivi6g03594 318 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 64 318 IPR044246 GO:0009788
Vivi6g03594 318 MobiDBLite consensus disorder prediction 265 285 - -
Vivi6g03594 318 MobiDBLite consensus disorder prediction 119 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03594 Vivi-Chr6 129353890 129354846 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03594 98 161 C2H2 Transcription Factor Family AT1G67030 42.188 6.72e-09 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi6g03594 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03594 - - vvo:131614653 483.411