Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03593 ATGTCTGAAAGAATTTCTATTGGAAATACTGAAGACAAATGCTTGAAACGCAAAATGATTGAAGAATCAGAGATAGAACTGAGCAAAATGATTGAAGAATCAGAGATAGAACTGAGAAAGGAATCGAAAAACATTGCACCAAATTCTCAAGCTGATCAAGAGAAGGGCAAAATGGTTGAAGAGGTGGAGCCAAAACTGGATAACGAATCCAAGGTATTAGCACCATCAACTGGATCTAAAGATTTATTGACTCCAAGGCTTGATAATAACACCAAGCCAACTTCCAATCTGTTGCAGAATGGTGAACATTCAAGTTCATCTGAAAACGTTATTGCTGGAGTTTTACCTAAGGAAGTAAAGGAATTTCCTTGTCAATTTTGTGACAAGAAGTTCACAAATTTGCAAGCTCTCGGTGGTCACCAAAACGCTCATAAGAATGAACGTAACTCAAAAAAAAATAAACAACAAAGGAGGGAGGAGACAATCGTTTCCCCCCAAAGGTTTCAACTTACTTATTCAAACCCTTATAGTTATTCACGGCCTAGTCACTCTCAAGGGTCTTCATATTTTCGTAGCATGCAACAACCCATTGGCACTCATGTGGACAATACCACGCCATCTAGGCTTGGTTTTCCATTCGGTAACTACGGAGGGATGTATATGCCAAATACACCCTCCTCCCCGCCACCTCCATTTGTAATGCCAATGCCAAAGTCACCCCCTGCAATACCACAATTTAGGATGAATAATTATTTTGGTGGAAATCAAACTCCTGTACTGCCAGTTCTTCAAAGGCCAAACATTGTGGAATTGGATTTTTTTGGTCAAGCTAATCAAACCCATTCATCTGATGAGGGTGTAGAAGGAAGTTCCAATGCTCGATTTCCTTCTCATGATCTTCCAATAACACATGATTTTATTGGAGAAAATCAACTTCCAGAAGAGTTCAATGTGCCTTCTTCATCAACTGTGGACGAACTCGACTTAAATCTCAAACTTTAA 1002 0.3932 MSERISIGNTEDKCLKRKMIEESEIELSKMIEESEIELRKESKNIAPNSQADQEKGKMVEEVEPKLDNESKVLAPSTGSKDLLTPRLDNNTKPTSNLLQNGEHSSSSENVIAGVLPKEVKEFPCQFCDKKFTNLQALGGHQNAHKNERNSKKNKQQRREETIVSPQRFQLTYSNPYSYSRPSHSQGSSYFRSMQQPIGTHVDNTTPSRLGFPFGNYGGMYMPNTPSSPPPPFVMPMPKSPPAIPQFRMNNYFGGNQTPVLPVLQRPNIVELDFFGQANQTHSSDEGVEGSSNARFPSHDLPITHDFIGENQLPEEFNVPSSSTVDELDLNLKL 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03593 333 ProSiteProfiles Zinc finger C2H2 type domain profile. 122 149 IPR013087 -
Vivi6g03593 333 ProSitePatterns Zinc finger C2H2 type domain signature. 124 144 IPR013087 -
Vivi6g03593 333 MobiDBLite consensus disorder prediction 72 106 - -
Vivi6g03593 333 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 21 333 IPR044246 GO:0009788
Vivi6g03593 333 Gene3D Classic Zinc Finger 103 176 - -
Vivi6g03593 333 MobiDBLite consensus disorder prediction 279 300 - -
Vivi6g03593 333 SUPERFAMILY beta-beta-alpha zinc fingers 120 149 IPR036236 -
Vivi6g03593 333 MobiDBLite consensus disorder prediction 144 161 - -
Vivi6g03593 333 MobiDBLite consensus disorder prediction 54 68 - -
Vivi6g03593 333 MobiDBLite consensus disorder prediction 138 162 - -
Vivi6g03593 333 MobiDBLite consensus disorder prediction 38 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03593 Vivi-Chr6 129335038 129336039 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03593 116 152 C2H2 Transcription Factor Family AT5G14010 56.757 4.65e-09 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi6g03593 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03593 - - vvo:131614653 659.062