Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03550 ATGGGAAGACCTCCTTGCTGTGACAAAGTTGGCATCAAGAAAGGTCCTTGGACACCTGAAGAAGATATCATCCTTGTTTCTTACATCCAAGAACATGGTCCGGGAAATTGGAGATCCGTTCCTACTAATACAGGGTTGTCAAGGTGCAGCAAAAGTTGCAGACTTAGATGGACAAATTATCTGAGGCCAGGAATCAAGAGAGGAAACTTCACTCCTCATGAAGAAGGAATGATTATTCATCTGCAAGCTCTTCTTGGTAACAAATGGGCAGCCATAGCTTCATACCTTCCACAAAGAACAGATAATGATATAAAGAATTATTGGAACACACATCTAAAGAAAAAGCTTAACAAATTTCAAGCTGCAGCTTTAGAGTCATCAAACTCAACAACTTATGCATCCAAGAGTTTCAGTGACAGAAGCTTAGATATCACCAACAACCATGCTTCGTCGCTAAAGCTTAATAATAGTAATAATCAAAATTCTCTTCAATCTTCTTCATCAACATATGCTTCAAGCACTGAGAATATTTCAAGGCTGTTAGAAGGTTGGATGAGATCTTCACCAAACTCACAGCAACAGATGAAAGGAAATTACCAATATGGTCATCATGATCATCAAGAGTTTCAAAGCAATGAGGATAATGTTATTATGGATGATGATAATAATAGCTTTGAAAATAATGGTAATTTGTTGGTGAAGTCTGCTTCAGTTCCAGCTGATTTAAACCTTCAAAGCCATCATCATCACCATCATCATCATCATCAGCAGGAGAAGATTAGCAAAGATGAAATGGTTTCACATGATCAAGAGTTTGATTCCATTCTTTCATTTGAGAATCTCAACAATGGTGTTACTTGGGACAAGTCAACTTGTGATTCTATGCCTGCTGAAAAGTGTTCTAATGCTGCTGCTTCTTCTTCTTCTCAAAAGAGTATCAAGAATTTATGCAATGCTCCTCCTCCATTGTCATTTCTTGAGAAATGGTTACTGGATGAAAATGTTGGTCATGTTGAAGAAATGATGGAGTTATCATCTCCAATGTTCTAA 1050 0.3743 MGRPPCCDKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLSRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLNKFQAAALESSNSTTYASKSFSDRSLDITNNHASSLKLNNSNNQNSLQSSSSTYASSTENISRLLEGWMRSSPNSQQQMKGNYQYGHHDHQEFQSNEDNVIMDDDNNSFENNGNLLVKSASVPADLNLQSHHHHHHHHHQQEKISKDEMVSHDQEFDSILSFENLNNGVTWDKSTCDSMPAEKCSNAAASSSSQKSIKNLCNAPPPLSFLEKWLLDENVGHVEEMMELSSPMF 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03550 349 Gene3D - 68 141 - -
Vivi6g03550 349 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 224 - -
Vivi6g03550 349 CDD SANT 69 112 IPR001005 -
Vivi6g03550 349 Gene3D - 13 66 - -
Vivi6g03550 349 CDD SANT 16 61 IPR001005 -
Vivi6g03550 349 FunFam MYB-related transcription factor 13 66 - -
Vivi6g03550 349 SMART sant 66 114 IPR001005 -
Vivi6g03550 349 SMART sant 13 63 IPR001005 -
Vivi6g03550 349 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vivi6g03550 349 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vivi6g03550 349 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vivi6g03550 349 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vivi6g03550 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Vivi6g03550 349 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vivi6g03550 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03550 Vivi-Chr6 128673697 128675517 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03550 1 136 MYB Transcription Factor Family AT5G62470 79.412 6.26e-81 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi6g03550 Myb_DNA-binding 1.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03550 K09422 - gmx:100802204 400.593