Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03539 ATGACTTCACAAAATTTCAACAATGGTGATATGGGTCTTTTCCCTTTATCAAACCCTGAAATGGGTTGTCTTCAGATTTTGAAACCCTCAATGTTTCAATCCACAGAAGAAGAAGGGTACTTAGGTTTAGGTGTTGAGAGAAAGAACTTGTCTTTGAAACTTGGTGATGGTGTAGAACAAAAAAAGTCTCTTTCTGTGAAAACTGGTTACTCCAAGCTTTGTTCTAGAGGCCATTGGAGACCAGGTGAAGATGCAAAACTTAAAGACCTTGTTGCTGAATATGGACCTCAAAATTGGAACTTGATTGCAGAACATCTTCAAGGAAGATCAGGAAAAAGTTGCAGATTAAGGTGGTTCAATCAGCTAGATCCAAGGATCAACAGAGGCACTTTTTCTGAGGAGGAAGAGGAGAGGCTTTTAGCTTCTCATAAAATGTATGGTAACAAATGGGCTATGATTGCAAGACTTTTTCCTGGGAGGACAGATAATGCAGTGAAGAATCATTGGCATGTAATCATGGCTAGGAGGCATAGGGAAAAGTGTAGTGTGTATAGGAGGAGAAAGCCAGTTGTTGAGAGTCTTTCCAAGGGTTTGAAATTGAGTCTTTCAAACAATGCAGCTAGTGATTCAAATTTGTCAAGTACTATAGATGGAAATGCCTCAACTTGTACTGATCTCTCACTTACTCCCTCTTCAGCTAAACTTAGTCCTCAACTGTTTGATAAGCTAGTGGCTAATGCTCAAAATCACCAAGGCTATGGAGCAATATTGGGTAAATCTAGAGAAAGTGGTGTGGCAACTAGTTTTGACAAGTATTTTGGAGGTTGTAACAACCATGAAAAGGAGGAAAACCTCAAAGTAATGGATGTGGTCCAGTCCAATTTTTCAGATTCAAACACATCAGAAGTATCAGTATCTGAGTCAGTTGGCACCAACAACAATAGGCCCAATATCTCAATTTCTGGTGAAAGTGAAAATGTTGGTGCTACAATGCTACTACCACCATTCATTGATTTTCTTGGAGTAGGAGCTAGCTAA 1038 0.394 MTSQNFNNGDMGLFPLSNPEMGCLQILKPSMFQSTEEEGYLGLGVERKNLSLKLGDGVEQKKSLSVKTGYSKLCSRGHWRPGEDAKLKDLVAEYGPQNWNLIAEHLQGRSGKSCRLRWFNQLDPRINRGTFSEEEEERLLASHKMYGNKWAMIARLFPGRTDNAVKNHWHVIMARRHREKCSVYRRRKPVVESLSKGLKLSLSNNAASDSNLSSTIDGNASTCTDLSLTPSSAKLSPQLFDKLVANAQNHQGYGAILGKSRESGVATSFDKYFGGCNNHEKEENLKVMDVVQSNFSDSNTSEVSVSESVGTNNNRPNISISGESENVGATMLLPPFIDFLGVGAS 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03539 345 Gene3D - 130 193 - -
Vivi6g03539 345 Gene3D - 76 127 - -
Vivi6g03539 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 123 177 IPR017930 -
Vivi6g03539 345 SMART sant 75 124 IPR001005 -
Vivi6g03539 345 SMART sant 127 175 IPR001005 -
Vivi6g03539 345 MobiDBLite consensus disorder prediction 299 320 - -
Vivi6g03539 345 ProSiteProfiles Myb-like domain profile. 76 122 IPR001005 -
Vivi6g03539 345 Pfam Myb-like DNA-binding domain 79 139 - -
Vivi6g03539 345 SUPERFAMILY Homeodomain-like 76 169 IPR009057 -
Vivi6g03539 345 CDD SANT 130 170 IPR001005 -
Vivi6g03539 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 122 IPR017930 -
Vivi6g03539 345 PANTHER MYB PROTEIN-RELATED 76 234 - -
Vivi6g03539 345 CDD SANT 79 120 IPR001005 -
Vivi6g03539 345 ProSiteProfiles Myb-like domain profile. 123 173 IPR001005 -
Vivi6g03539 345 FunFam MYB transcription factor 76 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03539 Vivi-Chr6 128313493 128316052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03539 59 251 MYB Transcription Factor Family AT5G17800 54.634 9.91e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi6g03539 Myb_DNA-bind_6 2e-15 CL0123