Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03536 ATGGCAGAGCCTGCATCCATCTACAATTTCAAAAAACATTACTCAACCCGCAGTTTTCAATGCCACTTCTGCCATCGCAAGTTCTTCTCTTCTCAAGCTCTTGGTGGCCATCAAAACGCACACAAACTCGAGAGAGCTGCTGCTAGAACATCAACCAAACCACTCTATTTTCACTCTTCTTCTCTCATAATCACCGACCTCAGGCCCAAGACCAAGCCCAAACCCAAACCCTACTTGCTTGAAGTTGACCTCCATGCTGCTGGCGCTTCTATAATCTATCGCAGTGCTGCTGCTCTTCCTACTCAACCTTCTGACCATGTCAATCTTGATCTCACCCTTCGTTTGTGA 348 0.4684 MAEPASIYNFKKHYSTRSFQCHFCHRKFFSSQALGGHQNAHKLERAAARTSTKPLYFHSSSLIITDLRPKTKPKPKPYLLEVDLHAAGASIIYRSAAALPTQPSDHVNLDLTLRL 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03536 115 ProSitePatterns Zinc finger C2H2 type domain signature. 21 41 IPR013087 -
Vivi6g03536 115 Gene3D Classic Zinc Finger 2 78 - -
Vivi6g03536 115 SUPERFAMILY beta-beta-alpha zinc fingers 16 46 IPR036236 -
Vivi6g03536 115 ProSiteProfiles Zinc finger C2H2 type domain profile. 19 46 IPR013087 -
Vivi6g03536 115 PANTHER ZINC FINGER PROTEIN 4-LIKE 12 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03536 Vivi-Chr6 128234501 128234848 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03536 17 115 C2H2 Transcription Factor Family AT5G57520 38.182 3.52e-16 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi6g03536 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03536 - - vvo:131614641 222.631