Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03527 ATGGAGAACTTAAGTCTCAACCTTGGAGTCAGTGAGCAAGATATGATCCACCAAGCTTTGGCCTTCTATGAAATAGCACTTGAAAAAAATTTCACCCGAGGACGTAAATCAGAGCAAGTACGTGCTGCATGTCTCTATATTGCATTCCGGCAAAACAAAAAGCCATACTTTCTCATTGATTTTTCAAATATTTTAAGGATAAATGTTTACGTGCTTGGAGCAGTTTTTTTGCAGCTCTGTGAAGTGTTGAGGCTTGAAAATCACCCAATTGTTAAAAAGCCTATTGATCCTTGTCTTTATCTTTATAAATATACTAATAATTTGTTAGGCCATAGAAATGTGGCTGTCTCTGAAACTGCACTGAACATCATTGCGAGTATGAACCGTGACTGGATGCAGACAGGGAGGAAACCTAGTGGATTATTTGGTGCTGCATTATACATCTCTGCTCTTGCACATGGTCATAACTTCTCTAAGCAAGATATTCTACGAATCGTCCATGTATGTGAGGCAACTTTGACCAAGCGATTGATAGAATTCGAATACACAGACTCTTCTAGCTTGACAGTATGTGTCTGCCTTTTAATGATTGAGGAGTTGAATACAATGACAAAAGAGCATGAAAAAAATCCGGTTGTGTTGCCAAACAGCAAATTCAAAGGATCTACTTCAAACGATCTACTGTGTGAACACAAAGATAGCGAAGTGCCCTATTTTGCACTTGGACTATGTAAAACATGTTACAAGGATTTTGAAATGCTATCGGGAGGGTTTAGTGGTGGTTTGGACCCTCCTGCATTCCAGCGTGCTGAGAGCGAGAGAGTAAAGAAAACACTTTCAAAGGAAAATGCAGATGTGTTGAAGGCATCAAATGGCACATGCCAAGGACAGATAGAAGATGTGCCTGTCTCTGTGCTAGAAAGGGATAACACTAGTGCGGAAACTCAAGATGAATCAGGAAATTTCTCTGATATCGATGATCATGAGGTTGATGGGTATATTTTCAATGAGGAAGAGAAATACTACAAGAAGATAATATGGGAAAGTGCGAACCGCGAGTATCTTGAGGAGCAAGCAGCCAAGGAAGCAGCTGTAGCCGCTGAGAAGAAAATTTATGAAGAAAATATGAAAAATTGTCCGGTAGAATCCAGAGAACTTTATGAATCTACTACTGCAGCTGTGGCAAAATCCAGAAAGGAAATGAAGCAGAGACGAGCTCAAGAGGCAAAAAATTCACGGCCTGCTCAGTCTGCTGCAGAGGCCGCTTGCCAAATGGTGAAAAACAAGAGGCTTAGTAAAAGAGTCAATTTTGATCGCCTTGCAAAATTATTTGAAGACGAACCAGCAAAAACGCATAGTCCCAAGAAAGTACGATTTGATCTAGCTTCGGATAATCACAGTAAATTTCAGTCTAAGGTTGATGATGATCAAGAGGATGATGGGCTGAGATCGGGGCATTATCATAAGGATGATGACAAAGATTGTTGA 1488 0.4026 MENLSLNLGVSEQDMIHQALAFYEIALEKNFTRGRKSEQVRAACLYIAFRQNKKPYFLIDFSNILRINVYVLGAVFLQLCEVLRLENHPIVKKPIDPCLYLYKYTNNLLGHRNVAVSETALNIIASMNRDWMQTGRKPSGLFGAALYISALAHGHNFSKQDILRIVHVCEATLTKRLIEFEYTDSSSLTVCVCLLMIEELNTMTKEHEKNPVVLPNSKFKGSTSNDLLCEHKDSEVPYFALGLCKTCYKDFEMLSGGFSGGLDPPAFQRAESERVKKTLSKENADVLKASNGTCQGQIEDVPVSVLERDNTSAETQDESGNFSDIDDHEVDGYIFNEEEKYYKKIIWESANREYLEEQAAKEAAVAAEKKIYEENMKNCPVESRELYESTTAAVAKSRKEMKQRRAQEAKNSRPAQSAAEAACQMVKNKRLSKRVNFDRLAKLFEDEPAKTHSPKKVRFDLASDNHSKFQSKVDDDQEDDGLRSGHYHKDDDKDC 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03527 495 Gene3D - 1 88 - -
Vivi6g03527 495 FunFam Transcription factor IIIB subunit 96 185 - -
Vivi6g03527 495 MobiDBLite consensus disorder prediction 395 409 - -
Vivi6g03527 495 FunFam Transcription factor IIIB 90 kDa subunit 1 89 - -
Vivi6g03527 495 MobiDBLite consensus disorder prediction 394 422 - -
Vivi6g03527 495 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 3 433 IPR000812 GO:0006352|GO:0070897
Vivi6g03527 495 MobiDBLite consensus disorder prediction 444 495 - -
Vivi6g03527 495 Gene3D Single helix bin 315 364 - -
Vivi6g03527 495 Pfam Transcription factor TFIIB repeat 95 181 IPR013150 GO:0017025
Vivi6g03527 495 Pfam Transcription factor TFIIB repeat 4 80 IPR013150 GO:0017025
Vivi6g03527 495 SUPERFAMILY Cyclin-like 8 87 IPR036915 -
Vivi6g03527 495 SUPERFAMILY Cyclin-like 95 180 IPR036915 -
Vivi6g03527 495 Gene3D - 96 185 - -
Vivi6g03527 495 CDD CYCLIN_TFIIIB90_rpt2 93 183 - -
Vivi6g03527 495 Pfam Brf1-like TBP-binding domain 323 445 IPR011665 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03527 Vivi-Chr6 128124155 128134751 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03527 1 429 Inorganic Solute Cotransporters AT2G01280 41.043 8.70e-91 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03527 K15196 - gmx:100789154 542.732