Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03526 ATGGTTTTCTGCGATCACTGTGTCAAAGACGTTTTAGCGGAGCGTCACGATGATTGTTACTTAACTTGTACTTCTTGTGGTAAGGTGCTGGAGGATCAGTATTTTACTGAGGAGCCGACTTTTGTTAAAGACTCAGCAGGAAAGAGCAAGTTATCGGGAAGTTATGTAAAAGCGGTTCAAAGTGAATTTTCTCTTTCACGTGAAAGGACTTTACATAGAGCTTCTAAAGAAATGGAGAACTTAAGTCTCAACCTTGGAGTCAGTGAGCAAGATATGATCCACCAAGCTTTGGCCTTCTATGAAATAGCACTTGAAAAAAATTTCACCCGAGGACGTAAATCAGAGCAAGTACGTGCTGCATGTCTCTATATTGCATTCCGGCAAAACAAAAAGCCATACTTTCTCATTGATTTTTCAAATATTTTAAGGATAAATGTTTACGTGCTTGGAGCAGTTTTTTTGCAGCTCTGTGAAGTGTTGAGGCTTGAAAATCACCCAATTGTTAAAAAGCCTATTGATCCTTGTCTTTATCTTTATAAATATACTAATAATTTGTTAGGCCATAGAAATGTGGCTGTCTCTGAAACTGCACTGAACATCATTGCGAGTATGAACCGTGACTGGATGCAGACAGGGAGGAAACCTAGTGGATTATTTGGTGCTGCATTATACATCTCTGCTCTTGCACATGGTCATAACTTCTCTAAGCAAGATATTCTACGAATCGTCCATGTATGTGAGGCAACTTTGACCAAGCGATTGATAGAATTCGAATACACAGACTCTTCTAGCTTGACAGTATGTGTCTGCCTTTTAATGATTGAGGAGTTGAATACAATGACAAAAGAGCATGAAAAAAATCCGGTTGTGTTGCCAAACAGCAAATTCAAAGGATCTACTTCAAACGATCTACTGTGTGAACACAAAGATAGCGAAGTGCCCTATTTTGCACTTGGACTATGTAAAACATGTTACAAGGATTTTGAAATGCTATCGGGAGGGTTTAGTGGTGGTTTGGACCCTCCTGCATTCCAGCGTGCTGAGAGCGAGAGAGTAAAGAAAACACTTTCAAAGGAAAATGCAGATGTGTTGAAGGCATCAAATGGCACATGCCAAGGACAGATAGAAGATGTGCCTGTCTCTGTGCTAGAAAGGGATAACACTAGTGCGGAAACTCAAGATGAATCAGGAAATTTCTCTGATATCGATGATCATGAGGTTGATGGGTATATTTTCAATGAGGAAGAGAAATACTACAAGAAGATAATATGGGAAAGTGCGAACCGCGAGTATCTTGAGGAGCAAGCAGCCAAGGAAGCAGCTGTAGCCGCTGAGAAGAAAATTTATGAAGAAAATATGAAAAATTGTCCGGTAGAATCCAGAGAACTTTATGAATCTACTACTGCAGCTGTGGCAAAATCCAGAAAGAAATGGCTACCTATAGGCTGGATTTAG 1455 0.3993 MVFCDHCVKDVLAERHDDCYLTCTSCGKVLEDQYFTEEPTFVKDSAGKSKLSGSYVKAVQSEFSLSRERTLHRASKEMENLSLNLGVSEQDMIHQALAFYEIALEKNFTRGRKSEQVRAACLYIAFRQNKKPYFLIDFSNILRINVYVLGAVFLQLCEVLRLENHPIVKKPIDPCLYLYKYTNNLLGHRNVAVSETALNIIASMNRDWMQTGRKPSGLFGAALYISALAHGHNFSKQDILRIVHVCEATLTKRLIEFEYTDSSSLTVCVCLLMIEELNTMTKEHEKNPVVLPNSKFKGSTSNDLLCEHKDSEVPYFALGLCKTCYKDFEMLSGGFSGGLDPPAFQRAESERVKKTLSKENADVLKASNGTCQGQIEDVPVSVLERDNTSAETQDESGNFSDIDDHEVDGYIFNEEEKYYKKIIWESANREYLEEQAAKEAAVAAEKKIYEENMKNCPVESRELYESTTAAVAKSRKKWLPIGWI 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03526 484 Gene3D - 173 262 - -
Vivi6g03526 484 CDD CYCLIN_TFIIIB90_rpt2 170 260 - -
Vivi6g03526 484 Gene3D - 64 165 - -
Vivi6g03526 484 FunFam Transcription factor IIIB 90 kDa subunit 63 166 - -
Vivi6g03526 484 Pfam Transcription factor TFIIB repeat 68 157 IPR013150 GO:0017025
Vivi6g03526 484 Pfam Transcription factor TFIIB repeat 172 258 IPR013150 GO:0017025
Vivi6g03526 484 Gene3D Single helix bin 392 441 - -
Vivi6g03526 484 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 2 432 IPR000812 GO:0006352|GO:0070897
Vivi6g03526 484 FunFam Transcription factor IIIB subunit 173 262 - -
Vivi6g03526 484 SUPERFAMILY Cyclin-like 172 257 IPR036915 -
Vivi6g03526 484 SUPERFAMILY Cyclin-like 74 164 IPR036915 -
Vivi6g03526 484 Pfam Brf1-like TBP-binding domain 400 455 IPR011665 -
Vivi6g03526 484 PRINTS Transcription initiation factor IIB signature 119 138 IPR000812 GO:0006352|GO:0070897
Vivi6g03526 484 PRINTS Transcription initiation factor IIB signature 213 229 IPR000812 GO:0006352|GO:0070897
Vivi6g03526 484 PRINTS Transcription initiation factor IIB signature 16 36 IPR000812 GO:0006352|GO:0070897
Vivi6g03526 484 CDD CYCLIN_TFIIIB90_rpt1 70 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03526 Vivi-Chr6 128123856 128133301 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03526 1 477 Inorganic Solute Cotransporters AT2G01280 39.877 2.71e-93 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03526 K15196 - gmx:100817609 575.859