Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vivi6g03523 | ATGGTTTTCTGCGATCACTGTGTCAAAGACGTTTTAGCGGAGCGTCACGATGATTGTTACTTAACTTGTACTTCTTGTGGTAAGGTGCTGGAGGATCAGTATTTTACTGAGGAGCCGACTTTTGTTAAAGACTCAGCAGGAAAGAGCAAGTTATCGGGAAGTTATGTAAAAGCGGTTCAAAGTGAATTTTCTCTTTCACGTGAAAGGACTTTACATAGAGCTTCTAAAGAAATGGAGAACTTAAGTCTCAACCTTGGAGTCAGTGAGCAAGATATGATCCACCAAGCTTTGGCCTTCTATGAAATAGCACTTGAAAAAAATTTCACCCGAGGACGTAAATCAGAGCAAGTACGTGCTGCATGTCTCTATATTGCATTCCGGCAAAACAAAAAGCCATACTTTCTCATTGATTTTTCAAATATTTTAAGGATAAATGTTTACGTGCTTGGAGCAGTTTTTTTGCAGCTCTGTGAAGTGTTGAGGCTTGAAAATCACCCAATTGTTAAAAAGCCTATTGATCCTTGTCTTTATCTTTATAAATATACTAATAATTTGTTAGGCCATAGAAATGTGGCTGTCTCTGAAACTGCACTGAACATCATTGCGAGTATGAACCGTGACTGGATGCAGACAGGGAGGAAACCTAGTGGATTATTTGGTGCTGCATTATACATCTCTGCTCTTGCACATGGTCATAACTTCTCTAAGCAAGATATTCTACGAATCGTCCATGTATGTGAGGCAACTTTGACCAAGCGATTGATAGAATTCGAATACACAGACTCTTCTAGCTTGACAATTGAGGAGTTGAATACAATGACAAAAGAGCATGAAAAAAATCCGGTTGTGTTGCCAAACAGCAAATTCAAAGGATCTACTTCAAACGATCTACTGTGTGAACACAAAGATAGCGAAGTGCCCTATTTTGCACTTGGACTATGTAAAACATGTTACAAGGATTTTGAAATGCTATCGGGAGGGTTTAGTGGTGGTTTGGACCCTCCTGCATTCCAGCGTGCTGAGAGCGAGAGAGTAAAGAAAACACTTTCAAAGGAAAATGCAGATGTGTTGAAGGCATCAAATGGCACATGCCAAGGACAGATAGAAGATGTGCCTGTCTCTGTGCTAGAAAGGGATAACACTAGTGCGGAAACTCAAGATGAATCAGGAAATTTCTCTGATATCGATGATCATGAGGTTGATGGGTATATTTTCAATGAGGAAGAGAAATACTACAAGAAGATAATATGGGAAAGTGCGAACCGCGAGTATCTTGAGGAGCAAGCAGCCAAGGAAGCAGCTGTAGCCGCTGAGAAGAAAATTTATGAAGAAAATATGAAAAATTGTCCGGTAGAATCCAGAGAACTTTATGAATCTACTACTGCAGCTGTGGCAAAATCCAGAAAGGAAATGAAGCAGAGACGAGCTCAAGAGGCAAAAAATTCACGGCCTGCTCAGTCTGCTGCAGAGGCCGCTTGCCAAATGGTGAAAAACAAGAGGCTTAGTAAAAGAGTCAATTTTGATCGCCTTGCAAAATTATTTGAAGACGAACCAGCAAAAACGCATAGTCCCAAGAAAGTACGATTTGATCTAGCTTCGGATAATCACAGTAAATTTCAGTCTAAGGTTGATGATGATCAAGAGGATGATGGGCTGAGATCGGGGCATTATCATAAGGATGATGACAAAGATTGTTGA | 1698 | 0.4028 | MVFCDHCVKDVLAERHDDCYLTCTSCGKVLEDQYFTEEPTFVKDSAGKSKLSGSYVKAVQSEFSLSRERTLHRASKEMENLSLNLGVSEQDMIHQALAFYEIALEKNFTRGRKSEQVRAACLYIAFRQNKKPYFLIDFSNILRINVYVLGAVFLQLCEVLRLENHPIVKKPIDPCLYLYKYTNNLLGHRNVAVSETALNIIASMNRDWMQTGRKPSGLFGAALYISALAHGHNFSKQDILRIVHVCEATLTKRLIEFEYTDSSSLTIEELNTMTKEHEKNPVVLPNSKFKGSTSNDLLCEHKDSEVPYFALGLCKTCYKDFEMLSGGFSGGLDPPAFQRAESERVKKTLSKENADVLKASNGTCQGQIEDVPVSVLERDNTSAETQDESGNFSDIDDHEVDGYIFNEEEKYYKKIIWESANREYLEEQAAKEAAVAAEKKIYEENMKNCPVESRELYESTTAAVAKSRKEMKQRRAQEAKNSRPAQSAAEAACQMVKNKRLSKRVNFDRLAKLFEDEPAKTHSPKKVRFDLASDNHSKFQSKVDDDQEDDGLRSGHYHKDDDKDC | 565 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vivi6g03523 | 565 | CDD | CYCLIN_TFIIIB90_rpt2 | 170 | 260 | - | - | |
Vivi6g03523 | 565 | Pfam | Transcription factor TFIIB repeat | 172 | 258 | IPR013150 | GO:0017025 | |
Vivi6g03523 | 565 | Pfam | Transcription factor TFIIB repeat | 68 | 157 | IPR013150 | GO:0017025 | |
Vivi6g03523 | 565 | PRINTS | Transcription initiation factor IIB signature | 213 | 229 | IPR000812 | GO:0006352|GO:0070897 | |
Vivi6g03523 | 565 | PRINTS | Transcription initiation factor IIB signature | 119 | 138 | IPR000812 | GO:0006352|GO:0070897 | |
Vivi6g03523 | 565 | PRINTS | Transcription initiation factor IIB signature | 16 | 36 | IPR000812 | GO:0006352|GO:0070897 | |
Vivi6g03523 | 565 | MobiDBLite | consensus disorder prediction | 463 | 491 | - | - | |
Vivi6g03523 | 565 | Gene3D | - | 173 | 262 | - | - | |
Vivi6g03523 | 565 | MobiDBLite | consensus disorder prediction | 514 | 565 | - | - | |
Vivi6g03523 | 565 | Gene3D | Single helix bin | 385 | 434 | - | - | |
Vivi6g03523 | 565 | Pfam | Brf1-like TBP-binding domain | 393 | 515 | IPR011665 | - | |
Vivi6g03523 | 565 | SUPERFAMILY | Cyclin-like | 172 | 257 | IPR036915 | - | |
Vivi6g03523 | 565 | SUPERFAMILY | Cyclin-like | 74 | 164 | IPR036915 | - | |
Vivi6g03523 | 565 | MobiDBLite | consensus disorder prediction | 465 | 479 | - | - | |
Vivi6g03523 | 565 | Gene3D | - | 64 | 165 | - | - | |
Vivi6g03523 | 565 | PANTHER | TRANSCRIPTION INITIATION FACTOR IIB-RELATED | 2 | 503 | IPR000812 | GO:0006352|GO:0070897 | |
Vivi6g03523 | 565 | FunFam | Transcription factor IIIB subunit | 173 | 262 | - | - | |
Vivi6g03523 | 565 | FunFam | Transcription factor IIIB 90 kDa subunit | 63 | 166 | - | - | |
Vivi6g03523 | 565 | CDD | CYCLIN_TFIIIB90_rpt1 | 70 | 160 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vivi6g03523 | Vivi-Chr6 | 128123856 | 128134751 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vivi6g03523 | 1 | 499 | Inorganic Solute Cotransporters | AT2G01280 | 41.211 | 9.18e-106 | 325 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vivi6g03523 | K15196 | - | gmx:100789154 | 650.973 |