Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03523 ATGGTTTTCTGCGATCACTGTGTCAAAGACGTTTTAGCGGAGCGTCACGATGATTGTTACTTAACTTGTACTTCTTGTGGTAAGGTGCTGGAGGATCAGTATTTTACTGAGGAGCCGACTTTTGTTAAAGACTCAGCAGGAAAGAGCAAGTTATCGGGAAGTTATGTAAAAGCGGTTCAAAGTGAATTTTCTCTTTCACGTGAAAGGACTTTACATAGAGCTTCTAAAGAAATGGAGAACTTAAGTCTCAACCTTGGAGTCAGTGAGCAAGATATGATCCACCAAGCTTTGGCCTTCTATGAAATAGCACTTGAAAAAAATTTCACCCGAGGACGTAAATCAGAGCAAGTACGTGCTGCATGTCTCTATATTGCATTCCGGCAAAACAAAAAGCCATACTTTCTCATTGATTTTTCAAATATTTTAAGGATAAATGTTTACGTGCTTGGAGCAGTTTTTTTGCAGCTCTGTGAAGTGTTGAGGCTTGAAAATCACCCAATTGTTAAAAAGCCTATTGATCCTTGTCTTTATCTTTATAAATATACTAATAATTTGTTAGGCCATAGAAATGTGGCTGTCTCTGAAACTGCACTGAACATCATTGCGAGTATGAACCGTGACTGGATGCAGACAGGGAGGAAACCTAGTGGATTATTTGGTGCTGCATTATACATCTCTGCTCTTGCACATGGTCATAACTTCTCTAAGCAAGATATTCTACGAATCGTCCATGTATGTGAGGCAACTTTGACCAAGCGATTGATAGAATTCGAATACACAGACTCTTCTAGCTTGACAATTGAGGAGTTGAATACAATGACAAAAGAGCATGAAAAAAATCCGGTTGTGTTGCCAAACAGCAAATTCAAAGGATCTACTTCAAACGATCTACTGTGTGAACACAAAGATAGCGAAGTGCCCTATTTTGCACTTGGACTATGTAAAACATGTTACAAGGATTTTGAAATGCTATCGGGAGGGTTTAGTGGTGGTTTGGACCCTCCTGCATTCCAGCGTGCTGAGAGCGAGAGAGTAAAGAAAACACTTTCAAAGGAAAATGCAGATGTGTTGAAGGCATCAAATGGCACATGCCAAGGACAGATAGAAGATGTGCCTGTCTCTGTGCTAGAAAGGGATAACACTAGTGCGGAAACTCAAGATGAATCAGGAAATTTCTCTGATATCGATGATCATGAGGTTGATGGGTATATTTTCAATGAGGAAGAGAAATACTACAAGAAGATAATATGGGAAAGTGCGAACCGCGAGTATCTTGAGGAGCAAGCAGCCAAGGAAGCAGCTGTAGCCGCTGAGAAGAAAATTTATGAAGAAAATATGAAAAATTGTCCGGTAGAATCCAGAGAACTTTATGAATCTACTACTGCAGCTGTGGCAAAATCCAGAAAGGAAATGAAGCAGAGACGAGCTCAAGAGGCAAAAAATTCACGGCCTGCTCAGTCTGCTGCAGAGGCCGCTTGCCAAATGGTGAAAAACAAGAGGCTTAGTAAAAGAGTCAATTTTGATCGCCTTGCAAAATTATTTGAAGACGAACCAGCAAAAACGCATAGTCCCAAGAAAGTACGATTTGATCTAGCTTCGGATAATCACAGTAAATTTCAGTCTAAGGTTGATGATGATCAAGAGGATGATGGGCTGAGATCGGGGCATTATCATAAGGATGATGACAAAGATTGTTGA 1698 0.4028 MVFCDHCVKDVLAERHDDCYLTCTSCGKVLEDQYFTEEPTFVKDSAGKSKLSGSYVKAVQSEFSLSRERTLHRASKEMENLSLNLGVSEQDMIHQALAFYEIALEKNFTRGRKSEQVRAACLYIAFRQNKKPYFLIDFSNILRINVYVLGAVFLQLCEVLRLENHPIVKKPIDPCLYLYKYTNNLLGHRNVAVSETALNIIASMNRDWMQTGRKPSGLFGAALYISALAHGHNFSKQDILRIVHVCEATLTKRLIEFEYTDSSSLTIEELNTMTKEHEKNPVVLPNSKFKGSTSNDLLCEHKDSEVPYFALGLCKTCYKDFEMLSGGFSGGLDPPAFQRAESERVKKTLSKENADVLKASNGTCQGQIEDVPVSVLERDNTSAETQDESGNFSDIDDHEVDGYIFNEEEKYYKKIIWESANREYLEEQAAKEAAVAAEKKIYEENMKNCPVESRELYESTTAAVAKSRKEMKQRRAQEAKNSRPAQSAAEAACQMVKNKRLSKRVNFDRLAKLFEDEPAKTHSPKKVRFDLASDNHSKFQSKVDDDQEDDGLRSGHYHKDDDKDC 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03523 565 CDD CYCLIN_TFIIIB90_rpt2 170 260 - -
Vivi6g03523 565 Pfam Transcription factor TFIIB repeat 172 258 IPR013150 GO:0017025
Vivi6g03523 565 Pfam Transcription factor TFIIB repeat 68 157 IPR013150 GO:0017025
Vivi6g03523 565 PRINTS Transcription initiation factor IIB signature 213 229 IPR000812 GO:0006352|GO:0070897
Vivi6g03523 565 PRINTS Transcription initiation factor IIB signature 119 138 IPR000812 GO:0006352|GO:0070897
Vivi6g03523 565 PRINTS Transcription initiation factor IIB signature 16 36 IPR000812 GO:0006352|GO:0070897
Vivi6g03523 565 MobiDBLite consensus disorder prediction 463 491 - -
Vivi6g03523 565 Gene3D - 173 262 - -
Vivi6g03523 565 MobiDBLite consensus disorder prediction 514 565 - -
Vivi6g03523 565 Gene3D Single helix bin 385 434 - -
Vivi6g03523 565 Pfam Brf1-like TBP-binding domain 393 515 IPR011665 -
Vivi6g03523 565 SUPERFAMILY Cyclin-like 172 257 IPR036915 -
Vivi6g03523 565 SUPERFAMILY Cyclin-like 74 164 IPR036915 -
Vivi6g03523 565 MobiDBLite consensus disorder prediction 465 479 - -
Vivi6g03523 565 Gene3D - 64 165 - -
Vivi6g03523 565 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 2 503 IPR000812 GO:0006352|GO:0070897
Vivi6g03523 565 FunFam Transcription factor IIIB subunit 173 262 - -
Vivi6g03523 565 FunFam Transcription factor IIIB 90 kDa subunit 63 166 - -
Vivi6g03523 565 CDD CYCLIN_TFIIIB90_rpt1 70 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03523 Vivi-Chr6 128123856 128134751 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03523 1 499 Inorganic Solute Cotransporters AT2G01280 41.211 9.18e-106 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03523 K15196 - gmx:100789154 650.973