Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03522 ATGGTTTTCTGCGATCACTGTGTCAAAGACGTTTTAGCGGAGCGTCACGATGATTGTTACTTAACTTGTACTTCTTGTGGTAAGGTGCTGGAGGATCAGTATTTTACTGAGGAGCCGACTTTTGTTAAAGACTCAGCAGGAAAGAGCAAGTTATCGGGAAGTTATGTAAAAGCGGTTCAAAGTGAATTTTCTCTTTCACGTGAAAGGACTTTACATAGAGCTTCTAAAGAAATGGAGAACTTAAGTCTCAACCTTGGAGTCAGTGAGCAAGATATGATCCACCAAGCTTTGGCCTTCTATGAAATAGCACTTGAAAAAAATTTCACCCGAGGACGTAAATCAGAGCAAGTACGTGCTGCATGTCTCTATATTGCATTCCGGCAAAACAAAAAGCCATACTTTCTCATTGATTTTTCAAATATTTTAAGGATAAATGTTTACGTGCTTGGAGCAGTTTTTTTGCAGCTCTGTGAAGTGTTGAGGCTTGAAAATCACCCAATTGTTAAAAAGCCTATTGATCCTTGTCTTTATCTTTATAAATATACTAATAATTTGTTAGGCCATAGAAATGTGGCTGTCTCTGAAACTGCACTGAACATCATTGCGAGTATGAACCGTGACTGGATGCAGACAGGGAGGAAACCTAGTGGATTATTTGGTGCTGCATTATACATCTCTGCTCTTGCACATGGTCATAACTTCTCTAAGCAAGATATTCTACGAATCGTCCATGTATGTGAGGCAACTTTGACCAAGCGATTGATAGAATTCGAATACACAGACTCTTCTAGCTTGACAGTATGTGTCTGCCTTTTAATGATTGAGGAGTTGAATACAATGACAAAAGAGCATGAAAAAAATCCGGTTGTGTTGCCAAACAGCAAATTCAAAGGATCTACTTCAAACGATCTACTGTGTGAACACAAAGATAGCGAAGTGCCCTATTTTGCACTTGGACTATGTAAAACATGTTACAAGGATTTTGAAATGCTATCGGGAGGGTTTAGTGGTGGTTTGGACCCTCCTGCATTCCAGCGTGCTGAGAGCGAGAGAGTAAAGAAAACACTTTCAAAGGAAAATGCAGATGTGTTGAAGGCATCAAATGGCACATGCCAAGGACAGATAGAAGATGTGCCTGTCTCTGTGCTAGAAAGGGATAACACTAGTGCGGAAACTCAAGATGAATCAGGAAATTTCTCTGATATCGATGATCATGAGGTTGATGGGTATATTTTCAATGAGGAAGAGAAATACTACAAGAAGATAATATGGGAAAGTGCGAACCGCGAGTATCTTGAGGAGCAAGCAGCCAAGGAAGCAGCTGTAGCCGCTGAGAAGAAAATTTATGAAGAAAATATGAAAAATTGTCCGGTAGAATCCAGAGAACTTTATGAATCTACTACTGCAGCTGTGGCAAAATCCAGAAAGGAAATGAAGCAGAGACGAGCTCAAGAGGCAAAAAATTCACGGCCTGCTCAGTCTGCTGCAGAGGCCGCTTGCCAAATGGTGAAAAACAAGAGGCTTAGTAAAAGAGTCAATTTTGATCGCCTTGCAAAATTATTTGAAGACGAACCAGCAAAAACGCATAGTCCCAAGAAAGTACGATTTGATCTAGCTTCGGATAATCACAGTAAATTTCAGTCTAAGGTTGATGATGATCAAGAGGATGATGGGCTGAGATCGGGGCATTATCATAAGGATGATGACAAAGATTGTTGA 1719 0.4026 MVFCDHCVKDVLAERHDDCYLTCTSCGKVLEDQYFTEEPTFVKDSAGKSKLSGSYVKAVQSEFSLSRERTLHRASKEMENLSLNLGVSEQDMIHQALAFYEIALEKNFTRGRKSEQVRAACLYIAFRQNKKPYFLIDFSNILRINVYVLGAVFLQLCEVLRLENHPIVKKPIDPCLYLYKYTNNLLGHRNVAVSETALNIIASMNRDWMQTGRKPSGLFGAALYISALAHGHNFSKQDILRIVHVCEATLTKRLIEFEYTDSSSLTVCVCLLMIEELNTMTKEHEKNPVVLPNSKFKGSTSNDLLCEHKDSEVPYFALGLCKTCYKDFEMLSGGFSGGLDPPAFQRAESERVKKTLSKENADVLKASNGTCQGQIEDVPVSVLERDNTSAETQDESGNFSDIDDHEVDGYIFNEEEKYYKKIIWESANREYLEEQAAKEAAVAAEKKIYEENMKNCPVESRELYESTTAAVAKSRKEMKQRRAQEAKNSRPAQSAAEAACQMVKNKRLSKRVNFDRLAKLFEDEPAKTHSPKKVRFDLASDNHSKFQSKVDDDQEDDGLRSGHYHKDDDKDC 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03522 572 Pfam Transcription factor TFIIB repeat 68 157 IPR013150 GO:0017025
Vivi6g03522 572 Pfam Transcription factor TFIIB repeat 172 258 IPR013150 GO:0017025
Vivi6g03522 572 Gene3D - 64 165 - -
Vivi6g03522 572 CDD CYCLIN_TFIIIB90_rpt2 170 260 - -
Vivi6g03522 572 MobiDBLite consensus disorder prediction 469 498 - -
Vivi6g03522 572 Gene3D - 173 262 - -
Vivi6g03522 572 Pfam Brf1-like TBP-binding domain 400 522 IPR011665 -
Vivi6g03522 572 MobiDBLite consensus disorder prediction 472 486 - -
Vivi6g03522 572 Gene3D Single helix bin 392 441 - -
Vivi6g03522 572 MobiDBLite consensus disorder prediction 521 572 - -
Vivi6g03522 572 SUPERFAMILY Cyclin-like 172 257 IPR036915 -
Vivi6g03522 572 FunFam Transcription factor IIIB subunit 173 262 - -
Vivi6g03522 572 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 2 510 IPR000812 GO:0006352|GO:0070897
Vivi6g03522 572 FunFam Transcription factor IIIB 90 kDa subunit 63 166 - -
Vivi6g03522 572 PRINTS Transcription initiation factor IIB signature 16 36 IPR000812 GO:0006352|GO:0070897
Vivi6g03522 572 PRINTS Transcription initiation factor IIB signature 119 138 IPR000812 GO:0006352|GO:0070897
Vivi6g03522 572 PRINTS Transcription initiation factor IIB signature 213 229 IPR000812 GO:0006352|GO:0070897
Vivi6g03522 572 CDD CYCLIN_TFIIIB90_rpt1 70 160 - -
Vivi6g03522 572 SUPERFAMILY Cyclin-like 74 164 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03522 Vivi-Chr6 128123856 128134751 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03522 1 506 Inorganic Solute Cotransporters AT2G01280 40.734 2.23e-103 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03522 K15196 - gmx:100789154 644.425