Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03519 ATGGCGAAAGAAGAACCTAATGTCGAATCTAAGAAGAATTTTCATAAACAAAATTTTCCATTTCTTCTTTTTGGATTCATTATTGATCCAACTAAGAGAAATCAAAAAGCTTACTCATGCAACTTTTGTAGCAAAAAATTTGTTACTCCACAAGCAAAAGGTGGACACCAAAATTGCCACAAATCTGAGAGAAAACTCAAGAAAAATAATGAAACAATAAAAAAAGCTTGGGAAATTTTCTCTAATGACAATGTGAGTCGACAAGTTACTATGACTGAGAATGACTTTGATTTGGTTTTAGAGGGAGATGCTGATAGTAATGTTGACCATGAACACAAAGTGACTCATAAGGAGGAAGCATCCAAGGATATTGATTTGAATCTTAAGCTTTAA 393 0.3257 MAKEEPNVESKKNFHKQNFPFLLFGFIIDPTKRNQKAYSCNFCSKKFVTPQAKGGHQNCHKSERKLKKNNETIKKAWEIFSNDNVSRQVTMTENDFDLVLEGDADSNVDHEHKVTHKEEASKDIDLNLKL 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03519 130 ProSitePatterns Zinc finger C2H2 type domain signature. 40 60 IPR013087 -
Vivi6g03519 130 SUPERFAMILY beta-beta-alpha zinc fingers 34 66 IPR036236 -
Vivi6g03519 130 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 33 84 IPR044246 GO:0009788
Vivi6g03519 130 Gene3D Classic Zinc Finger 9 95 - -
Vivi6g03519 130 ProSiteProfiles Zinc finger C2H2 type domain profile. 38 65 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03519 Vivi-Chr6 128087471 128087982 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03519 27 105 C2H2 Transcription Factor Family AT1G80730 34.884 3.61e-10 53.9