Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03454 ATGGAGATTCATTTTCAGCAACCAAACATGCAGCAGTTTCAGAATCATAATCAGAATCAGAATCAGAAAGCAGGAATTTCAGTGAACAAAGGAGGAAAGTTCAAAGGAAGAAACAGAAACAGCAATAACACAAACAAGTTTGTTGGTGTGAGACAAAGGCCATCAGGTAGGTGGGTTGCTGAGATCAAAGACACAACTCAGAAGATAAGAATGTGGCTTGGAACATTTGAGACAGCTGAGGAAGCAGCTCGAGCTTACGATGAAGCTGCGTGCCTTCTTCGAGGTTCGAATACTCGAACCAACTTCATCACTCATGTTTCATTGGACTCTCCTCTTGCTTCTAGGATAAGAAATCTTCTTAACAACAGAAAAGGCGAGAAAAAACAGGAGGATAATGCTGTTGCTTCTGCTCCAAGTAACATCAACACTCTTACTAGTAGTAATACTGATACAAATACAGTTACAAGCAATGGTGATAACAAGGAGAATTCTCTTTCGAGCGAGGCTACTCAGAATAAAGAACTTTTCGAGGATGGTTATAAACCGGATTTGAGCAATTGCAAGGAGATTTTTGAGTCAGGTTCACAATCCAATTTTCCATGGGGATTTGGACCTGTTTTTGACCATTTTCCTTTTGCTCAATTATTGGATATTACGAAGAGCAACGATGGAATGATCGATGCGTCTAGCCTGGAGCTTTCGGAATTTGAAAGAATGAAAGTTGAAAGACAGATATCAGCTTCACTTTATGCTATTAATGGAGTGCATGAGTACATGGAAGCTGTTCATGACTCTAATGAAACCTTATGGGATCTTCCACCTTTGTGCCCATTGTTCTGTTGA 843 0.4009 MEIHFQQPNMQQFQNHNQNQNQKAGISVNKGGKFKGRNRNSNNTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITHVSLDSPLASRIRNLLNNRKGEKKQEDNAVASAPSNINTLTSSNTDTNTVTSNGDNKENSLSSEATQNKELFEDGYKPDLSNCKEIFESGSQSNFPWGFGPVFDHFPFAQLLDITKSNDGMIDASSLELSEFERMKVERQISASLYAINGVHEYMEAVHDSNETLWDLPPLCPLFC 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03454 280 Pfam AP2 domain 46 95 IPR001471 GO:0003700|GO:0006355
Vivi6g03454 280 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Vivi6g03454 280 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700|GO:0006355
Vivi6g03454 280 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700|GO:0006355
Vivi6g03454 280 MobiDBLite consensus disorder prediction 124 167 - -
Vivi6g03454 280 Gene3D AP2/ERF domain 45 104 IPR036955 GO:0003700|GO:0006355
Vivi6g03454 280 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 18 246 - -
Vivi6g03454 280 SMART rav1_2 46 109 IPR001471 GO:0003700|GO:0006355
Vivi6g03454 280 MobiDBLite consensus disorder prediction 16 48 - -
Vivi6g03454 280 MobiDBLite consensus disorder prediction 34 48 - -
Vivi6g03454 280 CDD AP2 46 102 IPR001471 GO:0003700|GO:0006355
Vivi6g03454 280 MobiDBLite consensus disorder prediction 133 167 - -
Vivi6g03454 280 FunFam ethylene-responsive transcription factor RAP2-11 45 104 - -
Vivi6g03454 280 SUPERFAMILY DNA-binding domain 46 103 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03454 Vivi-Chr6 126961608 126962928 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03454 33 280 AP2-EREBP Transcription Factor Family AT5G19790 45.136 1.84e-56 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi6g03454 AP2 6.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03454 K09286 - gmx:100796898 380.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g03454 6 126961608 126962928 Vivi6g03454 6 126961608 126962928 ECH