Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03438 ATGCCAGAGTTGAGAAGTGGAGCTAGAAGGTCAAAGCGACTTGGAGATCTTCAGCCTGGTCCTGTACCTGTTGACCAAGGAGAAAATTGGGCACAGCCTGAACCGAACAGAGGTAGGAGGAGAGTTGGTGGTGGAAGAGGAAGAGGTGGTAATGCTACAGGTTTAGGTAAAGGGTCTTCACCAGCTGTTCCCACTAGGCGACCTGCAGCTGGTAGAGGCCGCGGAGCAAGATTGATTGATTTGGATCCTGAACCTTGTGAGGTCCTTCCTGAACCTGTTGCATTAAGGGCTCAGGAACCTGTTTACAATCACTTAGAGGTGGTAGCTAATAATAACATTGTAATGGAGGGTGGAAGTGGTGATAAAGTGGCAGCAGCCGCCGAAGAAGAGGCAACCACAACCCCTGTCCCCGAGAGGGTACAAGTTGGTAACTCTCCTGTATATAAGACAGAAAGGAAGTTGGGTAAGGGTGGTTTTGGCCAAGTGTATGTTGGCAGAAGGGTTAGCGGTGGCTCTGATCGAACAGGTCCTGATGCTATCGAGGTTGCACTCAAGTTTGAGCATAGAAACAGTAAAGGCTGTAATTATGGGCCTCCTTATGAGTGGCAAGTTTACAGTACTCTGAATGGTTGTTATGGCGTTCCCTGGGTTCATTACAAGGGTCGACAAGGAGATTTCTACATTTTGGTGATGGACATACTTGGGCCCAGCCTTTGGGACGTATGGAATTCTCTTGGTCAATCGATGTCGCCAAGTATGGCTGCTTGTATTGCAGTTGAGGCAATATCAATTCTTGAGAAGCTCCATATGAAAGGGTTTGTGCATGGAGATGTAAAACCGGAAAACTTTTTGCTTGGTCAACCTGGAACTGCTGATGATAAGAAGTTGTATCTTATTGATCTTGGTTTAGCTTCGAAGTGGAAGGATGCATCATCTGGTCAACACGTTGAATATGACCAGAGACCTGATATATTCAGGGGAACAATAAGGTATGCTAGTGTACATGCACATTTAGGTAGGACTGGCAGTCGAAGGGATGATCTTGAGTCACTGGCATACACCTTAATATTTCTCATAAAAGGGAGATTGCCGTGGCAGGGTTATCAGGGTGACAATAAAAGTTTTCTTGTTTGTAAGAAAAAAATGTCCACTTCTGCTGAGTTGATGTGCTGCTTTTGTCCCGCTCCATTTAAGCTGTTCCTGGAAGCAGTTACGAACATGAAATTTGACGAGGAGCCAAATTATTCCAAGCTCATATCACTTTTTGACAGCTTGATCGAACCATGCACTCCATTGAGACCTATTAGAATTGATGGAGCTTTAAAGGTTGGTCAAAAGCGAGGAAGAATGCTTATAAATCTGGAGGAAGATGAGCAGCCTAAGAAAAAAGTGCGATTGGGGAGTCCTGCTACTCAGTGGATATCAGTGTATAATGCACGCCGTCCCATGAAGCAAAGATATCATTATAACGTAGCGGACAATAGGCTCGGGCAGCATGTAGACAAGGGTATTGAGGATGGGTTGTACATAAGCTGTGTGGCCTCTTCAGCAAATTTGTGGGCGTTAATCATGGATGCGGGAACAGGTTTTTCTTCCCAAGTTTACGAGCTATCACCTGTCTTCCTGCACAAGGATTGGATTATGGAGCAATGGGAAAAAAATTACTATATCAGTTCAATAGCTGGTGCAGTTAATGGAAGTTCCTTGGTTGTCATGTCCAAAGGAACTCCTTATACACAGCAGTCCTACAAAGTGAGCGATTCTTTTCCTTTCAAATGGATAAACAAGAAGTGGAAAGAAGGATTCCATGTTACCTCCATGACTACTGCTGGCAGCCGCTGGGGTGTTGTAATGTCCAGGAATGCTGGGTATTCTGAGCAGGTTGTGGAGCTTGACTTTTTGTATCCAAGTGAAGGAATTCATCGACGATGGGAGAATAATTTCCGGATTACTTCTATGGCTGCTACTAATGATCAGGCAGCCTTCATACTGAGCATACCAAAACGCAAATTACTTGATGAAACTCAAGAGACTCTGAGAACATCTGCTTTTCCTAGCACCCATGTAAAGGAAAAATGGGCCAAGAATCTCTATATTGCCTCAATATGTTATGGGCGAACTGTTTGCTAG 2130 0.4465 MPELRSGARRSKRLGDLQPGPVPVDQGENWAQPEPNRGRRRVGGGRGRGGNATGLGKGSSPAVPTRRPAAGRGRGARLIDLDPEPCEVLPEPVALRAQEPVYNHLEVVANNNIVMEGGSGDKVAAAAEEEATTTPVPERVQVGNSPVYKTERKLGKGGFGQVYVGRRVSGGSDRTGPDAIEVALKFEHRNSKGCNYGPPYEWQVYSTLNGCYGVPWVHYKGRQGDFYILVMDILGPSLWDVWNSLGQSMSPSMAACIAVEAISILEKLHMKGFVHGDVKPENFLLGQPGTADDKKLYLIDLGLASKWKDASSGQHVEYDQRPDIFRGTIRYASVHAHLGRTGSRRDDLESLAYTLIFLIKGRLPWQGYQGDNKSFLVCKKKMSTSAELMCCFCPAPFKLFLEAVTNMKFDEEPNYSKLISLFDSLIEPCTPLRPIRIDGALKVGQKRGRMLINLEEDEQPKKKVRLGSPATQWISVYNARRPMKQRYHYNVADNRLGQHVDKGIEDGLYISCVASSANLWALIMDAGTGFSSQVYELSPVFLHKDWIMEQWEKNYYISSIAGAVNGSSLVVMSKGTPYTQQSYKVSDSFPFKWINKKWKEGFHVTSMTTAGSRWGVVMSRNAGYSEQVVELDFLYPSEGIHRRWENNFRITSMAATNDQAAFILSIPKRKLLDETQETLRTSAFPSTHVKEKWAKNLYIASICYGRTVC 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03438 709 CDD STKc_CK1 148 422 - -
Vivi6g03438 709 PANTHER CASEIN KINASE-RELATED 148 672 - -
Vivi6g03438 709 FunFam Casein kinase 1-like protein 119 468 - -
Vivi6g03438 709 ProSiteProfiles Protein kinase domain profile. 148 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g03438 709 Gene3D Transferase(Phosphotransferase) domain 1 114 465 - -
Vivi6g03438 709 ProSitePatterns Serine/Threonine protein kinases active-site signature. 273 285 IPR008271 GO:0004672|GO:0006468
Vivi6g03438 709 SUPERFAMILY Protein kinase-like (PK-like) 148 435 IPR011009 -
Vivi6g03438 709 MobiDBLite consensus disorder prediction 1 77 - -
Vivi6g03438 709 Pfam Protein kinase domain 148 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g03438 709 ProSitePatterns Protein kinases ATP-binding region signature. 154 185 IPR017441 GO:0005524
Vivi6g03438 709 SMART serkin_6 148 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03438 Vivi-Chr6 126627996 126635869 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03438 228 422 MAP Kinase Kinase Kinase AT3G27560 22.727 3.87e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Vivi6g03438 Pkinase 8.8e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03438 - - tpra:123890076 1331.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g03438 6 126627996 126635869 Vivi6g03438 6 126627996 126635869 ECH