Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03431 ATGAAAATGGATGTTTGCCAAAATGTATCAATTTCTGGTGACTGCAAACAAGAGAAACTCCTCAACCCTTCAAGTAGTCTTGACGACCTCTTTTCAGCTCAAAACATGGAAGTGAATGTTGAAATGGAGTGGCTTTCAGTGTTTGTTGAAGACTGTTTCTCAAGCCCACAAAGCTGTGTCTTGTTACCCTCAAATGCTCAAAACACAGCAACTACTACCATTTCATCAAACCCTTCAAACACAACAAACAAACCAAAGCAACAAAATGAGTCACCTTTTGCAGTTCCAGGCAAAGCAAGAAGCAAAAGGAAGAGACTTTCAGCTCCAAGAAGACCAAAAGACCCTTTGAGCATTTTATCAAACACCTTAAACCCACAAAATGAGTCACTATGTTATGACCCTCCTCTTCTAAAACAAACCTATTGGTTAGCTGACAGTGAACTCATTGTACCTAAAGTAGACATTGACACAGAGGTTGTTGAAAAGGAAGTTCTCAAAAAGGAAAGGTTTGATTTTGAGGGCTTTGAGGCTGAAAATGATGTTAACAATGGACAAAATCCAGTTCTTCCAACAAGAAGATGCACTCATTGTTTGTCACAGAGGACACCACAATGGAGGGCAGGACCATTAGGACCAAAGACATTGTGCAATGCTTGTGGTGTGAGGTACAAATCTGGGAGGTTGTTACCAGAGTATAGGCCTGCTAAGAGTCCAACTTTTGTGAGCTATTTGCATTCTAATTCACATAAGAAAGTCATGGAGATGAGGATGAATGTTGTGTCTTCTATTCCTAGTGAGTAG 801 0.402 MKMDVCQNVSISGDCKQEKLLNPSSSLDDLFSAQNMEVNVEMEWLSVFVEDCFSSPQSCVLLPSNAQNTATTTISSNPSNTTNKPKQQNESPFAVPGKARSKRKRLSAPRRPKDPLSILSNTLNPQNESLCYDPPLLKQTYWLADSELIVPKVDIDTEVVEKEVLKKERFDFEGFEAENDVNNGQNPVLPTRRCTHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMNVVSSIPSE 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03431 266 ProSiteProfiles GATA-type zinc finger domain profile. 188 224 IPR000679 GO:0006355|GO:0043565
Vivi6g03431 266 MobiDBLite consensus disorder prediction 71 90 - -
Vivi6g03431 266 Pfam GATA zinc finger 194 228 IPR000679 GO:0006355|GO:0043565
Vivi6g03431 266 Gene3D - 189 256 IPR013088 GO:0006355|GO:0008270
Vivi6g03431 266 MobiDBLite consensus disorder prediction 71 121 - -
Vivi6g03431 266 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 191 252 - -
Vivi6g03431 266 CDD ZnF_GATA 193 240 IPR000679 GO:0006355|GO:0043565
Vivi6g03431 266 ProSitePatterns GATA-type zinc finger domain. 194 219 IPR000679 GO:0006355|GO:0043565
Vivi6g03431 266 PANTHER GATA TRANSCRIPTION FACTOR 15 260 - -
Vivi6g03431 266 SMART GATA_3 188 242 IPR000679 GO:0006355|GO:0043565
Vivi6g03431 266 FunFam GATA transcription factor 183 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03431 Vivi-Chr6 126522176 126523573 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03431 40 256 C2C2-Gata Transcription Factor Family AT4G32890 41.518 2.11e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vivi6g03431 GATA 1.8e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03431 - - gmx:100786479 357.451