Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03421 ATGGAGGGTCAATCTTCAAATGAAGGCTCCAGTTCCACCAATGTTTCACCAAACTCTTGTGATTCAACCGTTGAGCTCAATATCAAAACTTTAGATCCCCGAATCTACAATTTTCAAGTTGAAAAAAATATGCCCGTTTCCTTGTTGAAAGAAAAAATTGCAAATGAAATAGGCGTACCGGCTAATCAGCAACGACTCATATTTAGAGGAAAAGTTTTGAAGGATGAACTCGTTCTTTCTGAGTATCTTGGGAATGGGCATACATTGCATTTAGTTGAAAGACAGCCAAATCCGCCGCAGATTTCTGGTACGGCTTCTGTTGAGACAATTACTACAAACAGTAACCGAGGAAACGATGCTGGATCAGGTGCTCCTCGTAACCGTGTTGGGCAAATTTCACACGGCGTGGTTCTTGGGACTTTTAATGTGGGGGAACAAGTTGAAGGCACTGCTCAAGACCTTACTAGGGTTATTGGGGCAGTTTTGAATTCTATTGCCAATGGGGGCCAGAGCACGATTAATTTTCCTAATTCCACACAACATTCTTCAGCACCAATCTGGTGGGCAGATTTGGCTCCACAGCATGGTATAGAGCAGGGGGAATCTGATCCCAATGATCTGGCCTGGAGGAGGAATGCATCAAGTGGAAATGTGAGGCCCATGAGACTTGATCAGTTTTACGATTTGTTGGAGGGACTGATGCAGCACCCGAATAGGATATCAGTTCAGATGCTCATGAGATATGTTGAGGCAAATGGAAGAATTAATGGACTCCAACAAAATGATTCTACCTGGTGGTCTTTTATTTCTTTTGCAGCTGGGAGTGTGCGTGATCTTTCTCCAACACAACATAAATTCTTACTAATATTATTTGCTGGCATCCTAAGTGTCCTCACAAAAACCTGCACCACTCGATTTGAATCCTTTCAAGTTGGAAAAATCACAGACACCCCTGAGGAAACATTTTATGCATTCTTCCTAGAAGTAGCACATATCATCAGTTTCATAATATGCTGGATTATAACTTTTATCCTCATTTTGCCGCTACAACATGCACTCCAAATATTTTTTGGGCTACTTTGTTCAGCAATCATTTATTTTGTTCGGCTGGAAGAAAAGACTTCAGCTTCAGGGGTTCATGTGGCTTGCGGAGACTCATTCAAGTTGCCTCTGTTTTGGTTTGCAATTATACATGCTGTTGGGTTTTCTCTTATTATTGGGTTAATGGTATTCCTAATTGCTTACTTGAGTTGGGAGTTCATACATAAAGGGAATCCAAGAGTCGTGGAAGTTAGTTTACAAATATTGGTGGGGATGCTATTGACCTTTTCAGTAGTCTTTTATTTGGCCATGCCGTGGCTAAATGATTCAGCTTCAGGGGTTTTCGAGGCTTGCGGTGGCTTATTCAAGTTGCCTACTTTTTGGTTTGCAATTTTAAAAGCTGTTGGGTTTTTTCTTAGTATTGGGTTAGTGATAATACTAACTGCTTGCTTGAGTTGGAAGTTCATACATAAAGGCAACCCAAGAGCTGTGGAAGTCAGTTTGATTTTTAGTTTGATTTCCGATGAATGA 1572 0.4103 MEGQSSNEGSSSTNVSPNSCDSTVELNIKTLDPRIYNFQVEKNMPVSLLKEKIANEIGVPANQQRLIFRGKVLKDELVLSEYLGNGHTLHLVERQPNPPQISGTASVETITTNSNRGNDAGSGAPRNRVGQISHGVVLGTFNVGEQVEGTAQDLTRVIGAVLNSIANGGQSTINFPNSTQHSSAPIWWADLAPQHGIEQGESDPNDLAWRRNASSGNVRPMRLDQFYDLLEGLMQHPNRISVQMLMRYVEANGRINGLQQNDSTWWSFISFAAGSVRDLSPTQHKFLLILFAGILSVLTKTCTTRFESFQVGKITDTPEETFYAFFLEVAHIISFIICWIITFILILPLQHALQIFFGLLCSAIIYFVRLEEKTSASGVHVACGDSFKLPLFWFAIIHAVGFSLIIGLMVFLIAYLSWEFIHKGNPRVVEVSLQILVGMLLTFSVVFYLAMPWLNDSASGVFEACGGLFKLPTFWFAILKAVGFFLSIGLVIILTACLSWKFIHKGNPRAVEVSLIFSLISDE 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03421 523 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 11 220 - -
Vivi6g03421 523 MobiDBLite consensus disorder prediction 1 20 - -
Vivi6g03421 523 SMART ubq_7 24 94 IPR000626 GO:0005515
Vivi6g03421 523 FunFam Large proline-rich protein BAG6 16 108 - -
Vivi6g03421 523 ProSiteProfiles Ubiquitin domain profile. 24 98 IPR000626 GO:0005515
Vivi6g03421 523 SUPERFAMILY Ubiquitin-like 10 99 IPR029071 -
Vivi6g03421 523 Gene3D - 12 107 - -
Vivi6g03421 523 Pfam Ubiquitin family 26 95 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03421 Vivi-Chr6 126353445 126359221 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03421 24 94 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 38.889 8.27e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03421 - - vvo:131609908 1026.93