Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03420 ATGGAGGGTCAATCTTCAAATGAAGGCTCCAGTTCCACCAATGTTTCACCAAACTCTTGTGATTCAACCGTTGAGCTCAATATCAAAACTTTAGATCCCCGAATCTACAATTTTCAAGTTGAAAAAAATATGCCCGTTTCCTTGTTGAAAGAAAAAATTGCAAATGAAATAGGCGTACCGGCTAATCAGCAACGACTCATATTTAGAGGAAAAGTTTTGAAGGATGAACTCGTTCTTTCTGAGTATCAAGTTGGGAATGGGCATACATTGCATTTAGTTGAAAGACAGCCAAATCCGCCGCAGATTTCTGGTACGGCTTCTGTTGAGACAATTACTACAAACAGTAACCGAGGAAACGATGCTGGATCAGGTGCTCCTCGTAACCGTGTTGGGCAAATTTCACACGGCGTGGTTCTTGGGACTTTTAATGTGGGGGAACAAGTTGAAGGCACTGCTCAAGACCTTACTAGGGTTATTGGGGCAGTTTTGAATTCTATTGCCAATGGGGGCCAGAGCACGATTAATTTTCCTAATTCCACACAACATTCTTCAGCACCAATCTGGTGGGCAGATTTGGCTCCACAGCATGGTATAGAGCAGGGGGAATCTGATCCCAATGATCTGGCCTGGAGGAGGAATGCATCAAGTGGAAATGTGAGGCCCATGAGACTTGATCAGTTTTACGATTTGTTGGAGGGACTGATGCAGCACCCGAATAGGATATCAGTTCAGATGCTCATGAGATATGTTGAGGCAAATGGAAGAATTAATGGACTCCAACAAAATGATTCTACCTGGTGGTCTTTTATTTCTTTTGCAGCTGGGAGTGTGCGTGATCTTTCTCCAACACAACATAAATTCTTACTAATATTATTTGCTGGCATCCTAAGTGTCCTCACAAAAACCTGCACCACTCGATTTGAATCCTTTCAAGTTGGAAAAATCACAGACACCCCTGAGGAAACATTTTATGCATTCTTCCTAGAAGTAGCACATATCATCAGTTTCATAATATGCTGGATTATAACTTTTATCCTCATTTTGCCGCTACAACATGCACTCCAAATATTTTTTGGGCTACTTTGTTCAGCAATCATTTATTTTGTTCGGCTGGAAGAAAAGACTTCAGCTTCAGGGGTTCATGTGGCTTGCGGAGACTCATTCAAGTTGCCTCTGTTTTGGTTTGCAATTATACATGCTGTTGGGTTTTCTCTTATTATTGGGTTAATGGTATTCCTAATTGCTTACTTGAGTTGGGAGTTCATACATAAAGGGAATCCAAGAGTCGTGGAAGTTAGTTTACAAATATTGGTGGGGATGCTATTGACCTTTTCAGTAGTCTTTTATTTGGCCATGCCGTGGCTAAATGATTCAGCTTCAGGGGTTTTCGAGGCTTGCGGTGGCTTATTCAAGTTGCCTACTTTTTGGTTTGCAATTTTAAAAGCTGTTGGGTTTTTTCTTAGTATTGGGTTAGTGATAATACTAACTGCTTGCTTGAGTTGGAAGTTCATACATAAAGGCAACCCAAGAGCTGTGGAAGTCAGTTTGATTTTTAGTTTGATTTCCGATGAATGA 1575 0.4102 MEGQSSNEGSSSTNVSPNSCDSTVELNIKTLDPRIYNFQVEKNMPVSLLKEKIANEIGVPANQQRLIFRGKVLKDELVLSEYQVGNGHTLHLVERQPNPPQISGTASVETITTNSNRGNDAGSGAPRNRVGQISHGVVLGTFNVGEQVEGTAQDLTRVIGAVLNSIANGGQSTINFPNSTQHSSAPIWWADLAPQHGIEQGESDPNDLAWRRNASSGNVRPMRLDQFYDLLEGLMQHPNRISVQMLMRYVEANGRINGLQQNDSTWWSFISFAAGSVRDLSPTQHKFLLILFAGILSVLTKTCTTRFESFQVGKITDTPEETFYAFFLEVAHIISFIICWIITFILILPLQHALQIFFGLLCSAIIYFVRLEEKTSASGVHVACGDSFKLPLFWFAIIHAVGFSLIIGLMVFLIAYLSWEFIHKGNPRVVEVSLQILVGMLLTFSVVFYLAMPWLNDSASGVFEACGGLFKLPTFWFAILKAVGFFLSIGLVIILTACLSWKFIHKGNPRAVEVSLIFSLISDE 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03420 524 MobiDBLite consensus disorder prediction 1 21 - -
Vivi6g03420 524 PRINTS Ubiquitin signature 34 54 IPR019956 -
Vivi6g03420 524 PRINTS Ubiquitin signature 76 97 IPR019956 -
Vivi6g03420 524 PRINTS Ubiquitin signature 55 75 IPR019956 -
Vivi6g03420 524 SUPERFAMILY Ubiquitin-like 10 100 IPR029071 -
Vivi6g03420 524 FunFam Large proline-rich protein BAG6 16 109 - -
Vivi6g03420 524 ProSiteProfiles Ubiquitin domain profile. 24 99 IPR000626 GO:0005515
Vivi6g03420 524 Pfam Ubiquitin family 26 96 IPR000626 GO:0005515
Vivi6g03420 524 Gene3D - 12 108 - -
Vivi6g03420 524 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 11 221 - -
Vivi6g03420 524 SMART ubq_7 24 95 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03420 Vivi-Chr6 126353445 126359221 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03420 24 95 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 38.889 1.43e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03420 - - vvo:131609908 1034.63