Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03389 ATGGCAACCCCACAGTCCAATCTTCCCCCAGGTTTTAGGTTCCATCCTACTGATGCAGAACTCATTCTTCACTACCTTAGAAAAAAAATTGCTTCCATTCCTTTACCTGTTTCCATCATTGCTGAAGTTGATATTTACAAATTAGATCCATGGGATTTGCCAGCTAAGGCTTTGTTTGGTGAGAAAGAGTGGTACTTTTTTAGTCCTAGAGATAGAAAGTACCCAAATGGTGCAAGGCCAAACAGGGCAGCTGCTTCAGGGTATTGGAAAGCCACTGGAACTGATAAGACAATAGTTGCATCATTGCCATGTGGAGGAAGATCACAAGAGAATATTATTGGTGTCAAAAAGGCACTTGTTTTTTACAAAGGAAAACCTCCAAAGGGCATTAAAACTAATTGGATCATGCATGAATATCGCCTTGTTGATAATAATAAACCAATTAAGCTCAAAGATTCCTCCATGAGGTTGGATGATTGGGTATTATGTCGAATTTACAAGAAATCAAAATGCGCGCTATCACCAACCGAATCAGAAACAATGATAGGCGAAGTCGAACACCCGGAGGAGGCGCAATTCAAAGAAACTCTTTTCCCCATCACAAAAAACACGCCATCTCCTCATCAAAACACACTCATGTCACAAAAATCAGTCTCTTTCTCAAACCTATTAGATGCTATGGACTACTCCATGCTAAGCAGTTTCTTATCAGAAAACCATTCAAATCCATCAGAAATTGGATCAAGTTCAAACTTCAACACTGAAAACTTTAACCAACAGCAACAATCTTCCCAAAACAACAATTACATGTCACAAAACAAGAATCCTTTAAAGCACCATCTTTCAAACATAGATGAGGACAACATGTCATTGTACCCATCAAAGAAGTACTTGAGTTCCTCTTGCAATTTCTCTAACATCAATACACAATATGAAAGCTACCTCATGAAGCAATCTTTGATGAATCAGCAATTGGTTTTAGGTCCTCATCATCAATACCAAGGATAA 1008 0.3849 MATPQSNLPPGFRFHPTDAELILHYLRKKIASIPLPVSIIAEVDIYKLDPWDLPAKALFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKTIVASLPCGGRSQENIIGVKKALVFYKGKPPKGIKTNWIMHEYRLVDNNKPIKLKDSSMRLDDWVLCRIYKKSKCALSPTESETMIGEVEHPEEAQFKETLFPITKNTPSPHQNTLMSQKSVSFSNLLDAMDYSMLSSFLSENHSNPSEIGSSSNFNTENFNQQQQSSQNNNYMSQNKNPLKHHLSNIDEDNMSLYPSKKYLSSSCNFSNINTQYESYLMKQSLMNQQLVLGPHHQYQG 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03389 335 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 273 - -
Vivi6g03389 335 ProSiteProfiles NAC domain profile. 8 168 IPR003441 GO:0003677|GO:0006355
Vivi6g03389 335 FunFam NAC transcription factor 56 17 173 - -
Vivi6g03389 335 SUPERFAMILY NAC domain 3 168 IPR036093 GO:0003677|GO:0006355
Vivi6g03389 335 MobiDBLite consensus disorder prediction 240 281 - -
Vivi6g03389 335 Gene3D NAC domain 17 172 IPR036093 GO:0003677|GO:0006355
Vivi6g03389 335 MobiDBLite consensus disorder prediction 240 278 - -
Vivi6g03389 335 Pfam No apical meristem (NAM) protein 9 141 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03389 Vivi-Chr6 125998889 126000844 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03389 4 335 NAC Transcription Factor Family AT3G04070 51.289 4.02e-107 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi6g03389 NAM 9.6e-40 No_clan