Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03388 ATGGAAGAACCAATTGTTGTCAACAAAGGTGAAGATCAAGTTCTGGATTTGCCTCCAGGATTCAGATTCCACCCAACCGATGCTGAGATAATAGTTTGTTATCTCACAGAAAAAGTGAAGAACAGCAAATTCAGTGCAACTGCTATCGGTGAAGCTGATTTGAACAAGTGTGAGCCTTGGGATTTACCAAAGAAAGCAAAGATGGGAGAGAAGGAATGGTACTTTTTTTGTCAGAAGGATAGAAAATATCCAACTGGGATGAGAACTAATAGAGCAACGGAATCTGGTTACTGGAAAGCTACTGGTAAGGATAAAGAGATTTTTTACAAAGGAAAGGGTAACCTTGTTGGAATGAAGAAGACTCTTGTGTTCTATAGAGGAAGAGCTCCCAAAGGGGAGAAAACTAATTGGGTTATGCATGAATTCAGATTAGAAGGCAAATTCGCAACTCAGAATCTCCCTAAAGCTGAAAAGGATGAATGGGTTGTGTCAAGGGTATTTCACAAGAACACAGATGTGAAGAAGCCTCAAATTTCTGGACTTTTAAGGATAAACTCAATTGGTCATCATGATGATCTTTTAGATTATTCTTCACTTCCACCTCTCATGGATCCTTCATACACAAACGATGATTACAAGGGAATTAGTGTTTCTAATCAACAAATTCCATCATCAACTAAATCACAATCAGACGGCTATTATCTTCCAAGCTTCGCCATCAACAATCAACAACAACTAATCAAGCCAGAAGATAATTACAACAGAATAATAAACTATGATCTTCATGAAATGAATCCAACCATGATGAACTACACTTCAAATTCACACCAATCCAATCTCAACAACCCGATCGGAAACACACTCTCGCAGTCGCAACCACAGCTCCGAATCCAAAATCCAAACATGAACTACTTCATGTATCAAAATAGGATGATGCAAGGTTCCATTCCCATTCCGACATTCGGAAACAACAATGAGTGCAAAATGGAACAATTCTCTTCAAATCAATCACAAGATACCGGTCTCAGCAACGACACATCATCGGCCGTATCAAAACAAGATATGGGAAGAAATAGGGCATCATTGTATGATGATCTTGAAGGTCCTTCCTCAGTTGCACCTCTCTCAGATTTGGAAGGTTTTTGGGACTATTGA 1155 0.3905 MEEPIVVNKGEDQVLDLPPGFRFHPTDAEIIVCYLTEKVKNSKFSATAIGEADLNKCEPWDLPKKAKMGEKEWYFFCQKDRKYPTGMRTNRATESGYWKATGKDKEIFYKGKGNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLEGKFATQNLPKAEKDEWVVSRVFHKNTDVKKPQISGLLRINSIGHHDDLLDYSSLPPLMDPSYTNDDYKGISVSNQQIPSSTKSQSDGYYLPSFAINNQQQLIKPEDNYNRIINYDLHEMNPTMMNYTSNSHQSNLNNPIGNTLSQSQPQLRIQNPNMNYFMYQNRMMQGSIPIPTFGNNNECKMEQFSSNQSQDTGLSNDTSSAVSKQDMGRNRASLYDDLEGPSSVAPLSDLEGFWDY 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03388 384 Gene3D NAC domain 26 174 IPR036093 GO:0003677|GO:0006355
Vivi6g03388 384 Pfam No apical meristem (NAM) protein 18 144 IPR003441 GO:0003677|GO:0006355
Vivi6g03388 384 ProSiteProfiles NAC domain profile. 17 169 IPR003441 GO:0003677|GO:0006355
Vivi6g03388 384 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 16 289 - -
Vivi6g03388 384 SUPERFAMILY NAC domain 14 170 IPR036093 GO:0003677|GO:0006355
Vivi6g03388 384 MobiDBLite consensus disorder prediction 331 355 - -
Vivi6g03388 384 FunFam NAC domain-containing protein 100-like 26 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03388 Vivi-Chr6 125934595 125936741 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03388 1 384 NAC Transcription Factor Family AT5G18270 48.492 5.50e-116 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi6g03388 NAM 5.5e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03388 - - aprc:113861501 512.301