Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03379 ATGGTGGGTGCTATCAAGGCTGCTCTCGGTGACGCAGTGTTAACATTCATGTGGGTTTTTTCTTCTTCCATGTTGGGTATAGTTTCAAAGGCAATAACACAAGCACTTGGTCTTCAAGACGTTTCGTACAACGGTTTCCCTTACCCTTCTTTGATTGTCACCACTACCGTTGTGTTTCTTCTCGTTTTTCTCTTCACCTTGATCGGTGCTGCAATGGGTGGTGCCAGCTTTAACCCTACTGGTACTGCTGCCTTTTACTCCGTTGGTATTGGTTCCGATACGCTTTTTTCCATGGCTCTTCGTTTCCCTGCCCAGGCTCTTGGTGCTGCGGGTGGTGCAATGGCAATTGCGGAGTTGATTCATCCGAAATATAGACACATGATTGGGGGTCCTTCTTTGAAAGTGGACTTGCACACTGGGGCTGCTGCTGAATTGGTTTTGACATTTGTGATTACTTTTGCAGTCCTCTGCATTTTCATCAAGGGGCCTCGTAATGATTTATTGAAGATTTGGTTGCTGGCCATGTCAACCGTCACTTTGGTCATGGTTGGCTCTGCTTACACTGGTCCGTCTATGAACCCAGCCAATGCCTTTGGTTGGGCATACTTGAACAACTGGCACAACACATGGGACCAATTCTATGTCTACTGGATTTGCCCCTTCACTGGAGCAATATTGGCTGCTTGGCTATTCCGCGCCATCTTCCCTCCACCAGAAGTAAAGCAGAAGAAAAAGAAAGCATGA 744 0.4704 MVGAIKAALGDAVLTFMWVFSSSMLGIVSKAITQALGLQDVSYNGFPYPSLIVTTTVVFLLVFLFTLIGAAMGGASFNPTGTAAFYSVGIGSDTLFSMALRFPAQALGAAGGAMAIAELIHPKYRHMIGGPSLKVDLHTGAAAELVLTFVITFAVLCIFIKGPRNDLLKIWLLAMSTVTLVMVGSAYTGPSMNPANAFGWAYLNNWHNTWDQFYVYWICPFTGAILAAWLFRAIFPPPEVKQKKKKA 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03379 247 PRINTS Major intrinsic protein family signature 143 161 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi6g03379 247 PRINTS Major intrinsic protein family signature 58 82 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi6g03379 247 PRINTS Major intrinsic protein family signature 174 196 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi6g03379 247 PRINTS Major intrinsic protein family signature 214 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi6g03379 247 PRINTS Major intrinsic protein family signature 6 25 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi6g03379 247 PRINTS Major intrinsic protein family signature 97 116 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi6g03379 247 Gene3D Glycerol uptake facilitator protein. 3 246 IPR023271 -
Vivi6g03379 247 Pfam Major intrinsic protein 4 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi6g03379 247 PANTHER AQUAPORIN SIP1-1 3 246 IPR044222 GO:0015250
Vivi6g03379 247 FunFam Aquaporin SIP1-1 2 247 - -
Vivi6g03379 247 SUPERFAMILY Aquaporin-like 4 239 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03379 Vivi-Chr6 125608071 125611918 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03379 2 247 Major Intrinsic Protein MIP AT5G18290 54.839 5.84e-82 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03379 K09875 - gmx:102669186 399.823